RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 MCUR1Q96AQ8 359 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 TTLL2Q9BWV7 592 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 NMUR2Q9GZQ4 415 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 ZNF395Q9H8N7 513 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 PAPOLBQ9NRJ5 636 aaKnown RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 OLA1Q9NTK5 396 aaKnown RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 PCMTD2Q9NV79 361 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 RBM22Q9NW64 420 aaKnown RBP eCLIP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 TMEM248Q9NWD8 314 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 WBP1LQ9NX94 342 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 FNIP2Q9P278 1114 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 MTRRQ9UBK8 725 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 IPO11Q9UI26 975 aaKnown RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 MAGED2Q9UNF1 606 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 ASB3Q9Y575 518 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 FNDC1Q4ZHG4 1894 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 COL4A6Q14031 1691 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 SLC12A8A0AV02 714 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 PSMD3O43242 534 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 LMNAP02545 664 aaKnown RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 HMBSP08397 361 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 F7P08709 466 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 CDH17Q12864 832 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 THOC5Q13769 683 aaKnown RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 LBRQ14739 615 aaKnown RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 RAP1GAP2Q684P5 730 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 NADSYN1Q6IA69 706 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 SLC30A9Q6PML9 568 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 TFAP2DQ7Z6R9 452 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 ATP6V0D2Q8N8Y2 350 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 HMCESQ96FZ2 354 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 BTN2A3PQ96KV6 586 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 ZNF778Q96MU6 729 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 SH3GL3Q99963 347 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 MECRQ9BV79 373 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 OXCT2Q9BYC2 517 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 ZYG11BQ9C0D3 744 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 SOX13Q9UN79 622 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 AAR2Q9Y312 384 aaKnown RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 TANC1Q9C0D5 1861 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 NYNRINQ9P2P1 1898 aaKnown RBP10.88□□□□□ -0.67
CLIP1-210ENST00000538120 MAGEB16A2A368 324 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 J3KR12 359 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 TPP1O14773 563 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 AHCYL1O43865 530 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 GSRP00390 522 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 ITGA2BP08514 1039 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 ESRRAP11474 423 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-210ENST00000538120 NMBRP28336 390 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 NDST2P52849 883 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 RPL10AP62906 217 aaKnown RBP10.88□□□□□ -0.67
CLIP1-210ENST00000538120 SLC34A1Q06495 639 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 HSF5Q4G112 596 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-210ENST00000538120 TEDDM1Q5T9Z0 273 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 NAPEPLDQ6IQ20 393 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 TIGD7Q6NT04 549 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-210ENST00000538120 LRRC49Q8IUZ0 686 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 AZIN2Q96A70 460 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 CLPTM1LQ96KA5 538 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 TOX2Q96NM4 488 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 AGAP2Q99490 1192 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 DDX50Q9BQ39 737 aaKnown RBP10.88□□□□□ -0.67
CLIP1-210ENST00000538120 TBL1YQ9BQ87 522 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 KIFC1Q9BW19 673 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 IL22Q9GZX6 179 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 EMCNQ9ULC0 261 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 RPL26L1Q9UNX3 145 aaKnown RBP10.88□□□□□ -0.67
CLIP1-210ENST00000538120 BACE2Q9Y5Z0 518 aa10.88□□□□□ -0.67
CLIP1-210ENST00000538120 SHROOM3Q8TF72 1996 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 FCHO1O14526 889 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 SEC24AO95486 1093 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 PRKCGP05129 697 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 OR1D2P34982 312 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 GP5P40197 560 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 PDE1CQ14123 709 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-210ENST00000538120 IHHQ14623 411 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 USP41Q3LFD5 358 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 GRTP1Q5TC63 336 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 IRGCQ6NXR0 463 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 LINC00523Q86TU6 105 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 CIR1Q86X95 450 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-210ENST00000538120 TREML1Q86YW5 311 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 IFT43Q96FT9 208 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 IGSF21Q96ID5 467 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 CLSTN3Q9BQT9 956 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 MCMBPQ9BTE3 642 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 UBE2OQ9C0C9 1292 aaKnown RBP10.87□□□□□ -0.67
CLIP1-210ENST00000538120 TBX21Q9UL17 535 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 LRCH1Q9Y2L9 728 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 GREB1Q4ZG55 1949 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 KLF11O14901 512 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 TLR5O60602 858 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 ANXA9O76027 345 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 ALDH7A1P49419 539 aaKnown RBP10.87□□□□□ -0.67
CLIP1-210ENST00000538120 KCNQ1P51787 676 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 RING1Q06587 406 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 HSP90AA5PQ58FG0 334 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 IPMKQ8NFU5 416 aa10.87□□□□□ -0.67
CLIP1-210ENST00000538120 SHKBP1Q8TBC3 707 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms