RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 CD1EP15812 388 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 HOXB4P17483 251 aaPredicted RBP9.32□□□□□ -0.92
USP28-205ENST00000537706 ALDH4A1P30038 563 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 DEKP35659 375 aaKnown RBP9.32□□□□□ -0.92
USP28-205ENST00000537706 PPM1FP49593 454 aaPredicted RBP9.32□□□□□ -0.92
USP28-205ENST00000537706 ARSDP51689 593 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 LIMK2P53671 638 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 B4GALNT1Q00973 533 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 C1QBPQ07021 282 aaKnown RBP9.32□□□□□ -0.92
USP28-205ENST00000537706 NNTQ13423 1086 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 ERV3-1Q14264 604 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 ARSIQ5FYB1 569 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 ANKS6Q68DC2 871 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 ARHGAP17Q68EM7 881 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 OGFOD3Q6PK18 319 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 VPS36Q86VN1 386 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 SCML4Q8N228 414 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 OR4D9Q8NGE8 314 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 NDRG1Q92597 394 aaKnown RBP9.32□□□□□ -0.92
USP28-205ENST00000537706 PMEPA1Q969W9 287 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 ELMO3Q96BJ8 720 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 KLF6Q99612 283 aaPredicted RBP9.32□□□□□ -0.92
USP28-205ENST00000537706 KLQ9UEF7 1012 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 KCND3Q9UK17 655 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 TLR6Q9Y2C9 796 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 PCDHGA9Q9Y5G4 932 aaKnown RBP9.32□□□□□ -0.92
USP28-205ENST00000537706 RPS6KL1Q9Y6S9 549 aa9.32□□□□□ -0.92
USP28-205ENST00000537706 B4DGG1 531 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 VNN1O95497 513 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 L1CAMP32004 1257 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 CLCN1P35523 988 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 STAT5AP42229 794 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 CLCN6P51797 869 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 TCEA2Q15560 299 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 ZRSR2Q15696 482 aaKnown RBP9.31□□□□□ -0.92
USP28-205ENST00000537706 RAP1GAP2Q684P5 730 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 ENPP7Q6UWV6 458 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 CCAR2Q8N163 923 aaKnown RBP9.31□□□□□ -0.92
USP28-205ENST00000537706 OR2A12Q8NGT7 310 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 IRGQQ8WZA9 623 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 SEC14L1Q92503 715 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 FGFBP2Q9BYJ0 223 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 NIF3L1Q9GZT8 377 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 TWSG1Q9GZX9 223 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 DPEP2Q9H4A9 486 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 LRRIQ3A6PVS8 624 aaPredicted RBP9.31□□□□□ -0.92
USP28-205ENST00000537706 KATNA1O75449 491 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 STK17BO94768 372 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 CBX6O95503 412 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 PDGFAP04085 211 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 DLSTP36957 453 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 STAT1P42224 750 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 CASP4P49662 377 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 NUMBP49757 651 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 SRP54P61011 504 aaKnown RBP9.31□□□□□ -0.92
USP28-205ENST00000537706 BST2Q10589 180 aaKnown RBP9.31□□□□□ -0.92
USP28-205ENST00000537706 HLTFQ14527 1009 aaKnown RBP eCLIP9.31□□□□□ -0.92
USP28-205ENST00000537706 ZNF394Q53GI3 561 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 SPOPLQ6IQ16 392 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 JMJD6Q6NYC1 403 aaPredicted RBP9.31□□□□□ -0.92
USP28-205ENST00000537706 CCDC73Q6ZRK6 1079 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 BHLHA9Q7RTU4 235 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 ATP6V0D2Q8N8Y2 350 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 PARD3BQ8TEW8 1205 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 TSACCQ96A04 125 aaPredicted RBP9.31□□□□□ -0.92
USP28-205ENST00000537706 RTP4Q96DX8 246 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 MYEOVQ96EZ4 313 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 FCRL2Q96LA5 508 aaPredicted RBP9.31□□□□□ -0.92
USP28-205ENST00000537706 NUDT22Q9BRQ3 303 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 C2orf49Q9BVC5 232 aaPredicted RBP9.31□□□□□ -0.92
USP28-205ENST00000537706 MUC3BQ9H195 1237 aa9.31□□□□□ -0.92
USP28-205ENST00000537706 TMEM184BQ9Y519 407 aaPredicted RBP9.31□□□□□ -0.92
USP28-205ENST00000537706 ABCA2Q9BZC7 2435 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 LEFTY1O75610 366 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 RECKO95980 971 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 HLA-DRAP01903 254 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 LTFP02788 710 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 HSP90AA1P07900 732 aaKnown RBP9.3□□□□□ -0.92
USP28-205ENST00000537706 SRCP12931 536 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 LCP1P13796 627 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 COX6B1P14854 86 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 CAPN3P20807 821 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 IGFALSP35858 605 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 NEK4P51957 841 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 OR1D5P58170 312 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 DAOAP59103 153 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 SEMA5AQ13591 1074 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 ALG11Q2TAA5 492 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 GOLGA7BQ2TAP0 167 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 ZACNQ401N2 412 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 PRR30Q53SZ7 412 aaPredicted RBP9.3□□□□□ -0.92
USP28-205ENST00000537706 LYSMD3Q7Z3D4 306 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 RHOT1Q8IXI2 618 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 IQCKQ8N0W5 287 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 GOLGA5Q8TBA6 731 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 CXorf40AQ8TE69 158 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 CENPTQ96BT3 561 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 BTN2A3PQ96KV6 586 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 ACSS2Q9NR19 701 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 TFIP11Q9UBB9 837 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms