RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 FOXC1Q12948 553 aa15□□□□□ -0.01
USP28-204ENST00000537642 FGL2Q14314 439 aa15□□□□□ -0.01
USP28-204ENST00000537642 STAT4Q14765 748 aa15□□□□□ -0.01
USP28-204ENST00000537642 SHBQ15464 509 aa15□□□□□ -0.01
USP28-204ENST00000537642 TRIP6Q15654 476 aaKnown RBP15□□□□□ -0.01
USP28-204ENST00000537642 GDPD4Q6W3E5 623 aa15□□□□□ -0.01
USP28-204ENST00000537642 ARHGAP36Q6ZRI8 547 aa15□□□□□ -0.01
USP28-204ENST00000537642 IQCHQ86VS3 1027 aa15□□□□□ -0.01
USP28-204ENST00000537642 SPATS2Q86XZ4 545 aaKnown RBP15□□□□□ -0.01
USP28-204ENST00000537642 CPNE8Q86YQ8 564 aa15□□□□□ -0.01
USP28-204ENST00000537642 TP53INP2Q8IXH6 220 aa15□□□□□ -0.01
USP28-204ENST00000537642 TMEM145Q8NBT3 493 aa15□□□□□ -0.01
USP28-204ENST00000537642 BAHD1Q8TBE0 780 aaPredicted RBP15□□□□□ -0.01
USP28-204ENST00000537642 EXOC2Q96KP1 924 aa15□□□□□ -0.01
USP28-204ENST00000537642 CSPG4P5Q96PW8 444 aa15□□□□□ -0.01
USP28-204ENST00000537642 ELF4Q99607 663 aaPredicted RBP15□□□□□ -0.01
USP28-204ENST00000537642 CHP1Q99653 195 aa15□□□□□ -0.01
USP28-204ENST00000537642 MYOCQ99972 504 aa15□□□□□ -0.01
USP28-204ENST00000537642 OSBPL1AQ9BXW6 950 aa15□□□□□ -0.01
USP28-204ENST00000537642 DEF6Q9H4E7 631 aa15□□□□□ -0.01
USP28-204ENST00000537642 PCDH18Q9HCL0 1135 aa15□□□□□ -0.01
USP28-204ENST00000537642 FZD3Q9NPG1 666 aa15□□□□□ -0.01
USP28-204ENST00000537642 GDF3Q9NR23 364 aa15□□□□□ -0.01
USP28-204ENST00000537642 ETNK2Q9NVF9 386 aa15□□□□□ -0.01
USP28-204ENST00000537642 ZNHIT6Q9NWK9 470 aaKnown RBP15□□□□□ -0.01
USP28-204ENST00000537642 ANGPTL2Q9UKU9 493 aa15□□□□□ -0.01
USP28-204ENST00000537642 PCDHB9Q9Y5E1 797 aa15□□□□□ -0.01
USP28-204ENST00000537642 ANKRD36A6QL64 1941 aa15□□□□□ -0.01
USP28-204ENST00000537642 ACACBO00763 2458 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 DFFAO00273 331 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 TOP3BO95985 862 aaKnown RBP14.99□□□□□ -0.01
USP28-204ENST00000537642 TPM1P09493 284 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 H2AFZP0C0S5 128 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 HNRNPA2B1P22626 353 aaKnown RBP14.99□□□□□ -0.01
USP28-204ENST00000537642 ARL4AP40617 200 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 RPS21P63220 83 aaKnown RBP14.99□□□□□ -0.01
USP28-204ENST00000537642 RAD51Q06609 339 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 TBX2Q13207 712 aaPredicted RBP14.99□□□□□ -0.01
USP28-204ENST00000537642 SUZ12Q15022 739 aaKnown RBP14.99□□□□□ -0.01
USP28-204ENST00000537642 KIAA1161Q6NSJ0 714 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 SARM1Q6SZW1 724 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 H2AFVQ71UI9 128 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 RHBDD1Q8TEB9 315 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 CTNNBL1Q8WYA6 563 aaPredicted RBP14.99□□□□□ -0.01
USP28-204ENST00000537642 TSC1Q92574 1164 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 RAB7BQ96AH8 199 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 FEM1CQ96JP0 617 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 CNTNAP3BQ96NU0 1288 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 CNTNAP3Q9BZ76 1288 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 CTTNBP2NLQ9P2B4 639 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 UVRAGQ9P2Y5 699 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 GGT7Q9UJ14 662 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 ITM2BQ9Y287 266 aa14.99□□□□□ -0.01
USP28-204ENST00000537642 AKR1B10O60218 316 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 PROSCO94903 275 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 PIGNO95427 931 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 AKT2P31751 481 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 RGRP47804 291 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 IL10RBQ08334 325 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 OVGP1Q12889 678 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 TSR1Q2NL82 804 aaKnown RBP14.98□□□□□ -0.01
USP28-204ENST00000537642 LRRC73Q5JTD7 316 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 GLRX5Q86SX6 157 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 LZTR1Q8N653 840 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 TSEN2Q8NCE0 465 aaKnown RBP14.98□□□□□ -0.01
USP28-204ENST00000537642 SLC17A9Q9BYT1 436 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 CPEB1Q9BZB8 566 aaKnown RBP14.98□□□□□ -0.01
USP28-204ENST00000537642 ERVMER34-1Q9H9K5 563 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 NHEJ1Q9H9Q4 299 aaPredicted RBP14.98□□□□□ -0.01
USP28-204ENST00000537642 SP110Q9HB58 689 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 DKK3Q9UBP4 350 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 IPO11Q9UI26 975 aaKnown RBP14.98□□□□□ -0.01
USP28-204ENST00000537642 ARID1BQ8NFD5 2236 aaPredicted RBP14.98□□□□□ -0.01
USP28-204ENST00000537642 SHROOM3Q8TF72 1996 aa14.98□□□□□ -0.01
USP28-204ENST00000537642 TDRD6O60522 2096 aaKnown RBP14.97□□□□□ -0.01
USP28-204ENST00000537642 IGLON5A6NGN9 336 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 AREL1O15033 823 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 RAD51BO15315 384 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 TSPAN6O43657 245 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 MAGEC1O60732 1142 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 PALMO75781 387 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 PAK4O96013 591 aaPredicted RBP14.97□□□□□ -0.01
USP28-204ENST00000537642 CD48P09326 243 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 TMEM253P0C7T8 217 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 TIMP2P16035 220 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 ITIH2P19823 946 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 SPINK2P20155 84 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 IL4RP24394 825 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 GRK6P43250 576 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 SSR1P43307 286 aaKnown RBP14.97□□□□□ -0.01
USP28-204ENST00000537642 RXRGP48443 463 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 ARSEP51690 589 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 CDH6P55285 790 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 CLDN2P57739 230 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 HADHQ16836 314 aaKnown RBP14.97□□□□□ -0.01
USP28-204ENST00000537642 ATP13A4Q4VNC1 1196 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 TMCO3Q6UWJ1 677 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 GCNT7Q6ZNI0 430 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 TTC7BQ86TV6 843 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 GATAD2AQ86YP4 633 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms