RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 POP4O95707 220 aaKnown RBP8.58□□□□□ -1.04
USP28-203ENST00000537490 MPOP05164 745 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 NME1P15531 152 aaKnown RBP8.58□□□□□ -1.04
USP28-203ENST00000537490 JUNDP17535 347 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 GPD1P21695 349 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 ACTN2P35609 894 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 DUSP3P51452 185 aaPredicted RBP8.58□□□□□ -1.04
USP28-203ENST00000537490 COPB1P53618 953 aaKnown RBP8.58□□□□□ -1.04
USP28-203ENST00000537490 GSCP56915 257 aaPredicted RBP8.58□□□□□ -1.04
USP28-203ENST00000537490 GEMIN4P57678 1058 aaKnown RBP8.58□□□□□ -1.04
USP28-203ENST00000537490 CCDC173Q0VFZ6 552 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 C1orf61Q13536 156 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 PDE1CQ14123 709 aaPredicted RBP8.58□□□□□ -1.04
USP28-203ENST00000537490 SYCP1Q15431 976 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 CLEC16AQ2KHT3 1053 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 TBC1D25Q3MII6 688 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 LRRC73Q5JTD7 316 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 FKBP15Q5T1M5 1219 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 GDPD4Q6W3E5 623 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 SLFN11Q7Z7L1 901 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 TTC7BQ86TV6 843 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 PARGQ86W56 976 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 PHF13Q86YI8 300 aaPredicted RBP8.58□□□□□ -1.04
USP28-203ENST00000537490 RBFAQ8N0V3 343 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 DENND6BQ8NEG7 585 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 LMX1AQ8TE12 382 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 BAP1Q92560 729 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 NTAN1Q96AB6 310 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 CENPTQ96BT3 561 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 DUSP23Q9BVJ7 150 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 SELENOOQ9BVL4 669 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 TCEAL2Q9H3H9 227 aaPredicted RBP8.58□□□□□ -1.04
USP28-203ENST00000537490 PNMA8BQ9ULN7 279 aaPredicted RBP8.58□□□□□ -1.04
USP28-203ENST00000537490 HPCAL4Q9UM19 191 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 CSNK1G3Q9Y6M4 447 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 DSPP15924 2871 aaKnown RBP8.58□□□□□ -1.04
USP28-203ENST00000537490 CPED1A4D0V7 1026 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 RASA4BC9J798 803 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 H3BM21 787 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 INSIG1O15503 277 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 CCP110O43303 1012 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 AQP9O43315 295 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 RASA4O43374 803 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 USP12O75317 370 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 CSO75390 466 aaKnown RBP8.57□□□□□ -1.04
USP28-203ENST00000537490 GCATO75600 419 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 TMCC1O94876 653 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 PRB1P04280 392 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 GP1BAP07359 652 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 TPM2P07951 284 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 TIMP2P16035 220 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 TGM2P21980 687 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 EPHB2P29323 1055 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 IGFALSP35858 605 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 NSFP46459 744 aaKnown RBP8.57□□□□□ -1.04
USP28-203ENST00000537490 CYTH1Q15438 398 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 CDKN3Q16667 212 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 DEFB133Q30KQ1 61 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 SCYL2Q6P3W7 929 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 GUSBP11Q6P575 273 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 MON1BQ7L1V2 547 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 EFL1Q7Z2Z2 1120 aaKnown RBP8.57□□□□□ -1.04
USP28-203ENST00000537490 VPS36Q86VN1 386 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 ZSCAN30Q86W11 494 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 ZNF354CQ86Y25 554 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 SPACA3Q8IXA5 215 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 RTL3Q8N8U3 475 aaKnown RBP8.57□□□□□ -1.04
USP28-203ENST00000537490 C3orf20Q8ND61 904 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 IFI44Q8TCB0 444 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 MAPK15Q8TD08 544 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 HMCESQ96FZ2 354 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 NAF1Q96HR8 494 aaKnown RBP8.57□□□□□ -1.04
USP28-203ENST00000537490 PCMTD1Q96MG8 357 aaPredicted RBP8.57□□□□□ -1.04
USP28-203ENST00000537490 GDAP1L1Q96MZ0 367 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 DEPDC7Q96QD5 511 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 UBL7Q96S82 380 aaPredicted RBP8.57□□□□□ -1.04
USP28-203ENST00000537490 OSBPL1AQ9BXW6 950 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 TTYH3Q9C0H2 523 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 ABCG4Q9H172 646 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 USP29Q9HBJ7 922 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 MBNL1Q9NR56 388 aaKnown RBP8.57□□□□□ -1.04
USP28-203ENST00000537490 LIMA1Q9UHB6 759 aaKnown RBP8.57□□□□□ -1.04
USP28-203ENST00000537490 SALL4Q9UJQ4 1053 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 FZD10Q9ULW2 581 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 TRPM6Q9BX84 2022 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 DOCK4Q8N1I0 1966 aa8.57□□□□□ -1.04
USP28-203ENST00000537490 TDRD6O60522 2096 aaKnown RBP8.57□□□□□ -1.04
USP28-203ENST00000537490 MYLKQ15746 1914 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 FREM2Q5SZK8 3169 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 A0A1W2PNU3 283 aaPredicted RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 EME2A4GXA9 379 aaPredicted RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 ZSCAN5CA6NGD5 496 aaPredicted RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 EIF4E1BA6NMX2 242 aaKnown RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 LGALS16A8MUM7 142 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 WASH4PA8MWX3 477 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 TPP1O14773 563 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 CASC3O15234 703 aaKnown RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 CREB3O43889 395 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 TM7SF2O76062 418 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 CALB1P05937 261 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms