RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 VAV2P52735 878 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 GBE1Q04446 702 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 CCDC15Q0P6D6 951 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 LBRQ14739 615 aaKnown RBP13.15□□□□□ -0.3
VPS28-216ENST00000533806 TMEM259Q4ZIN3 620 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 TMCO4Q5TGY1 634 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 STPG1Q5TH74 334 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 GDPD4Q6W3E5 623 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 ZCCHC9Q8N567 271 aaKnown RBP13.15□□□□□ -0.3
VPS28-216ENST00000533806 TEX26Q8N6G2 289 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 PLD5Q8N7P1 536 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 HCAR2Q8TDS4 363 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 PPP1R16AQ96I34 528 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 EXOC2Q96KP1 924 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 CALR3Q96L12 384 aaKnown RBP13.15□□□□□ -0.3
VPS28-216ENST00000533806 TSGA13Q96PP4 275 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 EDEM2Q9BV94 578 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 NUSAP1Q9BXS6 441 aaKnown RBP13.15□□□□□ -0.3
VPS28-216ENST00000533806 MIR1-1HGQ9H1L0 117 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 SP110Q9HB58 689 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 DKK3Q9UBP4 350 aa13.15□□□□□ -0.3
VPS28-216ENST00000533806 ZFR2Q9UPR6 939 aaKnown RBP13.15□□□□□ -0.3
VPS28-216ENST00000533806 CACNA1EQ15878 2313 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 PCDH15Q96QU1 1955 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 A0A0U1RQJ8 604 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 A0A1W2PR77 199 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 LRRD1A4D1F6 860 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 PSTPIP1O43586 416 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 GJB3O75712 270 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 UGT2B4P06133 528 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 TIMP2P16035 220 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 ABL2P42684 1182 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 ID4P47928 161 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 CSNK1EP49674 416 aaKnown RBP13.14□□□□□ -0.31
VPS28-216ENST00000533806 AFF3P51826 1226 aaKnown RBP13.14□□□□□ -0.31
VPS28-216ENST00000533806 GSDMDP57764 484 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 RACK1P63244 317 aaKnown RBP13.14□□□□□ -0.31
VPS28-216ENST00000533806 ZNF284Q2VY69 593 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 PGBD5Q8N414 524 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 RYBPQ8N488 228 aaPredicted RBP13.14□□□□□ -0.31
VPS28-216ENST00000533806 LRRC57Q8N9N7 239 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 SPOCK2Q92563 424 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 MAML1Q92585 1016 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 RAB7BQ96AH8 199 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 ZNF641Q96N77 438 aaPredicted RBP13.14□□□□□ -0.31
VPS28-216ENST00000533806 KLHL32Q96NJ5 620 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 TUBGCP5Q96RT8 1024 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 DYRK4Q9NR20 520 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 DDX56Q9NY93 547 aaKnown RBP13.14□□□□□ -0.31
VPS28-216ENST00000533806 DTLQ9NZJ0 730 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 SEPT3Q9UH03 358 aa13.14□□□□□ -0.31
VPS28-216ENST00000533806 CEP192Q8TEP8 1941 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 C4orf47A7E2U8 309 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 TRAFD1O14545 582 aaPredicted RBP13.13□□□□□ -0.31
VPS28-216ENST00000533806 VILLO15195 856 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 SPOPO43791 374 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 RNGTTO60942 597 aaKnown RBP13.13□□□□□ -0.31
VPS28-216ENST00000533806 IPO7O95373 1038 aaKnown RBP13.13□□□□□ -0.31
VPS28-216ENST00000533806 WNT1P04628 370 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 CCNCP24863 283 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 NUDT1P36639 197 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 CDKN2BP42772 138 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 GRIA4P48058 902 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 MARCKSL1P49006 195 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 RAD51Q06609 339 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 GRIK2Q13002 908 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 HNRNPDQ14103 355 aaKnown RBP13.13□□□□□ -0.31
VPS28-216ENST00000533806 PUM1Q14671 1186 aaKnown RBP eCLIP13.13□□□□□ -0.31
VPS28-216ENST00000533806 GRM3Q14832 879 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 FBXL19Q6PCT2 694 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 MFSD7Q6UXD7 560 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 SRLQ86TD4 932 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 HORMAD1Q86X24 394 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 KATNAL2Q8IYT4 538 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 ATPAF2Q8N5M1 289 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 SNX19Q92543 992 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 RNF25Q96BH1 459 aaPredicted RBP13.13□□□□□ -0.31
VPS28-216ENST00000533806 ECHDC3Q96DC8 303 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 SLC6A18Q96N87 628 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 MGME1Q9BQP7 344 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 RTKNQ9BST9 563 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 CINPQ9BW66 212 aaPredicted RBP13.13□□□□□ -0.31
VPS28-216ENST00000533806 ZDHHC5Q9C0B5 715 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 SUV39H2Q9H5I1 410 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 TMEM9BQ9NQ34 198 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 DNAAF2Q9NVR5 837 aaKnown RBP13.13□□□□□ -0.31
VPS28-216ENST00000533806 CDV3Q9UKY7 258 aaKnown RBP13.13□□□□□ -0.31
VPS28-216ENST00000533806 DMTF1Q9Y222 760 aa13.13□□□□□ -0.31
VPS28-216ENST00000533806 A0A1B0GVT2 93 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 A0A1W2PQU0 124 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 MATN3O15232 486 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 TSPAN6O43657 245 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 PIGNO95427 931 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 KRT1P04264 644 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 SYPP08247 313 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 HSPA9P38646 679 aaKnown RBP13.12□□□□□ -0.31
VPS28-216ENST00000533806 PEX5P50542 639 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 RENBPP51606 427 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 SUOXP51687 545 aa13.12□□□□□ -0.31
VPS28-216ENST00000533806 ADCY2Q08462 1091 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms