RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SLC2A6Q9UGQ3 507 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 BCAP29Q9UHQ4 241 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 ADAMTS6Q9UKP5 1117 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 TRPC5OSA6NMA1 111 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 TNPO2O14787 897 aaKnown RBP21.46■■□□□ 1.03
VPS28-205ENST00000526204 MSI1O43347 362 aaKnown RBP21.46■■□□□ 1.03
VPS28-205ENST00000526204 UPP2O95045 317 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 LYNP07948 512 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 CCR10P46092 362 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 PAPOLAP51003 745 aaKnown RBP21.46■■□□□ 1.03
VPS28-205ENST00000526204 MLLT6P55198 1093 aaPredicted RBP21.46■■□□□ 1.03
VPS28-205ENST00000526204 NSUN2Q08J23 767 aaKnown RBP eCLIP21.46■■□□□ 1.03
VPS28-205ENST00000526204 NEPROQ6NW34 567 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 SCD5Q86SK9 330 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 DSELQ8IZU8 1212 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 SERPINB11Q96P15 392 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 MRGBPQ9NV56 204 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 NDFIP2Q9NV92 336 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 HEATR9A2RTY3 570 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 MANSC4A6NHS7 340 aaPredicted RBP21.46■■□□□ 1.03
VPS28-205ENST00000526204 CASQ2O14958 399 aaPredicted RBP21.46■■□□□ 1.03
VPS28-205ENST00000526204 PEX1O43933 1283 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 MGEA5O60502 916 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 ATP5F1P24539 256 aaPredicted RBP21.46■■□□□ 1.03
VPS28-205ENST00000526204 TAS2R39P59534 338 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 DSC3Q14574 896 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 CCNYL1Q8N7R7 359 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 GDPD5Q8WTR4 605 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 CCDC126Q96EE4 140 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 IFT43Q96FT9 208 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 SLC25A51Q9H1U9 297 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 CLIC5Q9NZA1 410 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 IPO11Q9UI26 975 aaKnown RBP21.46■■□□□ 1.03
VPS28-205ENST00000526204 HS3ST4Q9Y661 456 aa21.46■■□□□ 1.03
VPS28-205ENST00000526204 RAG1P15918 1043 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 THPOP40225 353 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 RENBPP51606 427 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 PGGT1BP53609 377 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 RPL26P61254 145 aaKnown RBP21.45■■□□□ 1.02
VPS28-205ENST00000526204 DLG1Q12959 904 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 SEPT6Q14141 434 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 ZNF460Q14592 562 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 FAM83EQ2M2I3 478 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 NXNQ6DKJ4 435 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 KDM1BQ8NB78 822 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 HIPK4Q8NE63 616 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 TRPV1Q8NER1 839 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 FATE1Q969F0 183 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 PPP1R36Q96LQ0 422 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 ZBTB26Q9HCK0 441 aa21.45■■□□□ 1.02
VPS28-205ENST00000526204 TADA2AO75478 443 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 SLC2A3P11169 496 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 CPB1P15086 417 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 WNT3AP56704 352 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 YWHAHQ04917 246 aaPredicted RBP21.44■■□□□ 1.02
VPS28-205ENST00000526204 TSTD2Q5T7W7 516 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 BNC2Q6ZN30 1099 aaPredicted RBP21.44■■□□□ 1.02
VPS28-205ENST00000526204 TRAPPC9Q96Q05 1148 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 ACSS2Q9NR19 701 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 C6orf203Q9P0P8 240 aaPredicted RBP21.44■■□□□ 1.02
VPS28-205ENST00000526204 INPP5FQ9Y2H2 1132 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 FNDC1Q4ZHG4 1894 aaPredicted RBP21.44■■□□□ 1.02
VPS28-205ENST00000526204 SMIM24O75264 130 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 MOCS2O96007 188 aaPredicted RBP21.44■■□□□ 1.02
VPS28-205ENST00000526204 UBTFL6P0CB48 400 aaPredicted RBP21.44■■□□□ 1.02
VPS28-205ENST00000526204 SDCCAG8Q86SQ7 713 aaPredicted RBP21.44■■□□□ 1.02
VPS28-205ENST00000526204 PGAM4Q8N0Y7 254 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 EFCAB3Q8N7B9 438 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 HEXDCQ8WVB3 486 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 MAELQ96JY0 434 aaKnown RBP21.44■■□□□ 1.02
VPS28-205ENST00000526204 FAR2Q96K12 515 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 RANBP9Q96S59 729 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 ADAM2Q99965 735 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 OMDQ99983 421 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 FAM192AQ9GZU8 254 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 UPF3AQ9H1J1 476 aaKnown RBP21.44■■□□□ 1.02
VPS28-205ENST00000526204 EFCAB1Q9HAE3 211 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 VPS45Q9NRW7 570 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 OSER1Q9NX31 292 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 MPP6Q9NZW5 540 aa21.44■■□□□ 1.02
VPS28-205ENST00000526204 H3BNX3 289 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 NDST2P52849 883 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 SATB1Q01826 763 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 TRIP10Q15642 601 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 PPM1LQ5SGD2 360 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 AGAP9Q5VTM2 703 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 KDELC1Q6UW63 502 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 TRIM67Q6ZTA4 783 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 UMODL1-AS1Q8N2C9 162 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 CATSPER2Q96P56 530 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 TSC22D3Q99576 134 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 ATXN3LQ9H3M9 355 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 EBF3Q9H4W6 596 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 POMKQ9H5K3 350 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 PCDHB8Q9UN66 801 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 G3BP2Q9UN86 482 aaKnown RBP21.43■■□□□ 1.02
VPS28-205ENST00000526204 TLR6Q9Y2C9 796 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 UQCRBP14927 111 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 YY1P25490 414 aa21.43■■□□□ 1.02
VPS28-205ENST00000526204 CHRNA4P43681 627 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms