RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 KCND2Q9NZV8 630 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 COX16Q9P0S2 106 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACTR3BQ9P1U1 418 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 VPS18Q9P253 973 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 C5AR2Q9P296 337 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANKFY1Q9P2R3 1169 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RABL2AQ9UBK7 228 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CACNG4Q9UBN1 327 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DKK4Q9UBT3 224 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC25A10Q9UBX3 287 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FBLN5Q9UBX5 448 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LPAR3Q9UBY5 353 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SEC63Q9UGP8 760 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL19Q9UHD0 177 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCSK1NQ9UHG2 260 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 AMACRQ9UHK6 382 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLCO3A1Q9UIG8 710 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDH22Q9UJ99 828 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FBXL7Q9UJT9 491 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MID2Q9UJV3 735 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OSGIN1Q9UJX0 560 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CORO1CQ9ULV4 474 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSF4Q9ULV5 492 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HPCAL4Q9UM19 191 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DAPP1Q9UN19 280 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PLA2G2DQ9UNK4 145 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPIEQ9UNP9 301 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ICKQ9UPZ9 632 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SHOC2Q9UQ13 582 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CNTN6Q9UQ52 1028 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SMC3Q9UQE7 1217 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CAMK2AQ9UQM7 478 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OSGIN2Q9Y236 505 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNAJC16Q9Y2G8 782 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KLHL20Q9Y2M5 609 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GDAQ9Y2T3 454 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PLEKHM1Q9Y4G2 1056 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNX14Q9Y5W7 946 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HS3ST3B1Q9Y662 390 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 EPN1Q9Y6I3 576 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNE2Q9Y6J6 123 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SQORQ9Y6N5 450 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SESN1Q9Y6P5 492 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 AP1M2Q9Y6Q5 423 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM169AQ9Y6X4 670 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RAD54L2Q9Y4B4 1467 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM94Q12767 1356 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KAT6BQ8WYB5 2073 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 COL4A3Q01955 1670 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPR75-ASB3A0A0A6YYF3 556 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRAV34A0A0B4J273 112 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A0G2JPF8 293 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM237BA0A1B0GVD1 139 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A1W2PQM1 296 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A1W2PRG0 241 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A1W2PRV1 198 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARHGAP10A1A4S6 786 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARHGEF37A1IGU5 675 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FRMD3A2A2Y4 597 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR2A25A4D2G3 310 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GRID2IPA4D2P6 1211 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 OOEPA6NGQ2 149 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 NPIPB15A6NHN6 443 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MANSC4A6NHS7 340 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRSS29PA6NIE9 313 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 UNC119BA6NIH7 251 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A20PA6NIJ5 464 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MBD3L5A6NJ08 208 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC9B1P1A6NJY1 282 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A7PA6NKC0 464 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SH2D7A6NKC9 451 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR6C76A6NM76 312 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANXA2P2A6NMY6 339 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 A8MV72 311 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A22PA8MWA6 464 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A12PA8MX19 464 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A23PA8MXZ1 464 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 EIF3CLB5ME19 914 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPR89AB7ZAQ6 455 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 HNRNPCL3B7ZW38 293 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 AKR1B15C9JRZ8 316 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRR23D1E9PI22 279 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 H0YAE9 185 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 H0YC42 278 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 BOLA2-SMG1P6H3BVE0 249 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 H7C1Q1 480 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 H7C4K7 107 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 J3KTA2 159 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 K7EPI3 171 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 UBXN8O00124 270 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RAB27BO00194 218 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 AP3B1O00203 1094 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CACNB4O00305 520 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC33A1O00400 549 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 POLRMTO00411 1230 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PES1O00541 588 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PEX12O00623 359 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCDH17O14917 1159 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIAA0391O15091 583 aaKnown RBP0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms