RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 WLSQ5T9L3 541 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 PIK3R6Q5UE93 754 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 TRNP1Q6NT89 227 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 SLC2A7Q6PXP3 512 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 TUBA1AQ71U36 451 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 UNC45BQ8IWX7 931 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 CACTIN-AS1Q8N1I8 211 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 BBOF1Q8ND07 529 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 TTLL2Q9BWV7 592 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 C8orf33Q9H7E9 229 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 MRPL40Q9NQ50 206 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 ZNF510Q9Y2H8 683 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 STON1Q9Y6Q2 735 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 RALGAPA1Q6GYQ0 2036 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 PCNX2A6NKB5 2137 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 RASA4BC9J798 803 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 IRAK2O43187 625 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 HRO43593 1189 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 PRKACBP22694 351 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 ITPKAP23677 461 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 DDX6P26196 483 aaKnown RBP eCLIP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 CCNFP41002 786 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 PCYT1AP49585 367 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 SEC24CP53992 1094 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 MAXP61244 160 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 SLC7A9P82251 487 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 MMRN1Q13201 1228 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 LRRC32Q14392 662 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 NR1I3Q14994 352 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 CRY1Q16526 586 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 AASDHQ4L235 1098 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 RBM20Q5T481 1227 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 TXNRD3NBQ6F5E7 133 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 GPR65Q8IYL9 337 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 LZTFL1Q9NQ48 299 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 SAE1Q9UBE0 346 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 EIF2B4Q9UI10 523 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 GGA2Q9UJY4 613 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 HS3ST4Q9Y661 456 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 ANKRD11Q6UB99 2663 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 A0A0U1RQJ8 604 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 CCDC78A2IDD5 438 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 K7EQS6 105 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 SDC3O75056 442 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 FBXO21O94952 628 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 GPD1P21695 349 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 GRIA2P42262 883 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 CLCN5P51795 746 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 GALCP54803 685 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 MARSP56192 900 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 SNX16P57768 344 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 TPI1P60174 286 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 PRKCQQ04759 706 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 FUT11Q495W5 492 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 MS4A13Q5J8X5 152 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 TMEM215Q68D42 235 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 CYP26C1Q6V0L0 522 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 RBM43Q6ZSC3 357 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 ANKS1BQ7Z6G8 1248 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 STK40Q8N2I9 435 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 FUCA2Q9BTY2 467 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 OSBPL2Q9H1P3 480 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 USP3Q9Y6I4 520 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 DUSP10Q9Y6W6 482 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 PIEZO2Q9H5I5 2752 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 A0A1B0GTH6 734 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 SMAD6O43541 496 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 MOCS3O95396 460 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 ATP5BP06576 529 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 XPAP23025 273 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 PRKCHP24723 683 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 NOS2P35228 1153 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 MATKP42679 507 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 CDH6P55285 790 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 EIF2B5Q13144 721 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 PPP2R5DQ14738 602 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 ARL13BQ3SXY8 428 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 MPPE1Q53F39 396 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 APTXQ7Z2E3 356 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 ZC3H3Q8IXZ2 948 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 E2F7Q96AV8 911 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 NELL2Q99435 816 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 SLC4A5Q9BY07 1137 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 ABCG8Q9H221 673 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 POLMQ9NP87 494 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 OLA1Q9NTK5 396 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 TRIM10Q9UDY6 481 aa8.02□□□□□ -1.13
LIMCH1-219ENST00000514096 AKR1B15C9JRZ8 316 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 GOLGA8MH3BSY2 632 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 GOT1P17174 413 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 SPINK2P20155 84 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 AMPD1P23109 780 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 HOXD9P28356 352 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 SERPINB3P29508 390 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 NTSR1P30989 418 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 OGDHQ02218 1023 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 SPA17Q15506 151 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 TRIP4Q15650 581 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 DLG2Q15700 870 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms