RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 SEMA3CQ99985 751 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 PAPOLBQ9NRJ5 636 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 C2orf71A6NGG8 1288 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 H3BMM5 538 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 EDIL3O43854 480 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 PLIN3O60664 434 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 ZMPSTE24O75844 475 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 FAM163BP0C2L3 166 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 HLA-DPA1P20036 260 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 CLCNKBP51801 687 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 GPX6P59796 221 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 MAP3K10Q02779 954 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 ZBTB17Q13105 803 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 METTL21CQ5VZV1 264 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 ANKS3Q6ZW76 656 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 TMEM174Q8WUU8 243 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 HIC2Q96JB3 615 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 MARK4Q96L34 752 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 ZFP42Q96MM3 310 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 OMDQ99983 421 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 TRMOQ9BU70 441 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 PNPLA8Q9NP80 782 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 ABLIM1O14639 778 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 MLYCDO95822 493 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 IGSF6O95976 241 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 EPHA3P29320 983 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 PIK3CGP48736 1102 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 TTPAP49638 278 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 PSME3P61289 254 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 USP4Q13107 963 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 PSMD5Q16401 504 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 SPDYE7PQ495Y7 208 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 FAM98BQ52LJ0 330 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 ARMC12Q5T9G4 340 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 SLC9A4Q6AI14 798 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 DIS3LQ8TF46 1054 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 NTAN1Q96AB6 310 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 CCDC28BQ9BUN5 200 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 BDH2Q9BUT1 245 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 A0A1W2PQH9 124 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 GLTPD2A6NH11 291 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 SAC3D1A6NKF1 404 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 PRKD1Q15139 912 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 HECTD3Q5T447 861 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 OLFML1Q6UWY5 402 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 RBM15BQ8NDT2 890 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 METTL6Q8TCB7 284 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 DQX1Q8TE96 717 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 CLEC4CQ8WTT0 213 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 NSMCE2Q96MF7 247 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 C9orf16Q9BUW7 83 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 DPY30Q9C005 99 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 ELOVL6Q9H5J4 265 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 CHCHD3Q9NX63 227 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 SYNCRIPO60506 623 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 SIN3BO75182 1162 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 RGS20O76081 388 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 CSH1P0DML2 217 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 CSH2P0DML3 217 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 CHN2P52757 468 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 SMARCB1Q12824 385 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 CYP51A1Q16850 503 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 NCBP2-AS2Q69YL0 99 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 OTOP3Q7RTS5 596 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 SYT11Q9BT88 431 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 SEMA4BQ9NPR2 832 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 CHRAC1Q9NRG0 131 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 MPP6Q9NZW5 540 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 ZNF487B1APH4 448 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 CDK18Q07002 472 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 PARP15Q460N3 678 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 TXNDC11Q6PKC3 985 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 MILR1Q7Z6M3 343 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 PCDH20Q8N6Y1 951 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 GLIS1Q8NBF1 620 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 SLC35F5Q8WV83 523 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 RMND5BQ96G75 393 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 BTN2A3PQ96KV6 586 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 ACTR8Q9H981 624 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 SIX4Q9UIU6 781 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 CORO1CQ9ULV4 474 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 CNTN6Q9UQ52 1028 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 VWA7Q9Y334 891 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 DDX60LQ5H9U9 1706 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 E9PAM4 449 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 RGS14O43566 566 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 DUSP11O75319 330 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 METTL18O95568 372 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 ATP6V0D1P61421 351 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 BCL2L1Q07817 233 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 ZNF284Q2VY69 593 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 SPRYD7Q5W111 196 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 LRRC8DQ7L1W4 858 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 YAF2Q8IY57 180 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 KCTD13Q8WZ19 329 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 RCN3Q96D15 328 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 VRTNQ9H8Y1 702 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 PDLIM7Q9NR12 457 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 FAM50BQ9Y247 325 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms