RNA–Protein interactions for RNA: ENST00000496197.5

PTPN7-218, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,463 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-218	ENST00000496197	VAT1	Q99536	393 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	HEPH	Q9BQS7	1158 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	MLPH	Q9BV36	600 aa	Predicted RBP	13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	RSPH9	Q9H1X1	276 aa	Predicted RBP	13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	GBA3	Q9H227	469 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	L2HGDH	Q9H9P8	463 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	SCUBE2	Q9NQ36	999 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	IL36A	Q9UHA7	158 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	PCYOX1	Q9UHG3	505 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	PPM1H	Q9ULR3	514 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	SLC8A2	Q9UPR5	921 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	PCDHGC4	Q9Y5F7	938 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	PLXND1	Q9Y4D7	1925 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	TRAFD1	O14545	582 aa	Predicted RBP	13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	TTI1	O43156	1089 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	STIP1	P31948	543 aa	Known RBP	13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	HSPA9	P38646	679 aa	Known RBP	13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	PSMD8	P48556	350 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	CSNK1D	P48730	415 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	PXN	P49023	591 aa	Predicted RBP	13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	VPS41	P49754	854 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	RPS14	P62263	151 aa	Known RBP	13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	CKAP4	Q07065	602 aa	Known RBP	13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	DMWD	Q09019	674 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	STARD3	Q14849	445 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	P3H1	Q32P28	736 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	SYCP2L	Q5T4T6	812 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	TSSK4	Q6SA08	328 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	GSTA5	Q7RTV2	222 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	BBS5	Q8N3I7	341 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	NOA1	Q8NC60	698 aa	Known RBP	13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	OR2T3	Q8NH03	318 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	PIP4K2C	Q8TBX8	421 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	HMGB4	Q8WW32	186 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	OR8D1	Q8WZ84	308 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	ARRDC3	Q96B67	414 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	MRGPRX1	Q96LB2	322 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	TRIM51	Q9BSJ1	452 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	CARD6	Q9BX69	1037 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	SLC25A51	Q9H1U9	297 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	RRAGD	Q9NQL2	400 aa	Predicted RBP	13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	SERGEF	Q9UGK8	458 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	RSPH14	Q9UHP6	348 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	TRHDE	Q9UKU6	1024 aa		13.65	□□□□□ -0.22
PTPN7-218	ENST00000496197	USP34	Q70CQ2	3546 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	MID1	O15344	667 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	OPHN1	O60890	802 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	ATG13	O75143	517 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	NEBL	O76041	1014 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	POP4	O95707	220 aa	Known RBP	13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	IL1B	P01584	269 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	KRT14	P02533	472 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	UGT2B4	P06133	528 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	PDHA1	P08559	390 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	DRD3	P35462	400 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	RECQL	P46063	649 aa	Predicted RBP	13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	NUMA1	Q14980	2115 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	PTPRR	Q15256	657 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	E2F5	Q15329	346 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	TMEM31	Q5JXX7	168 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	ANO7	Q6IWH7	933 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	KDELC1	Q6UW63	502 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	TMPRSS6	Q8IU80	811 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	AADAT	Q8N5Z0	425 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	SLCO2A1	Q92959	643 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	SMIM14	Q96QK8	99 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	FCRL5	Q96RD9	977 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	CPEB1	Q9BZB8	566 aa	Known RBP	13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	SPATA6	Q9NWH7	488 aa	Predicted RBP	13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	EBF1	Q9UH73	591 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	DOCK9	Q9BZ29	2069 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	SCN8A	Q9UQD0	1980 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	CEP192	Q8TEP8	1941 aa		13.64	□□□□□ -0.23
PTPN7-218	ENST00000496197	ALOX15B	O15296	676 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	RAD51C	O43502	376 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	ECEL1	O95672	775 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	PRL	P01236	227 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	C7	P10643	843 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	TDGF1	P13385	188 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	AVPR2	P30518	371 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	MAGEA9	P43362	315 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	DGKE	P52429	567 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	TERF1	P54274	439 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	AP1S1	P61966	158 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	TUBB2A	Q13885	445 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	CST6	Q15828	149 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	PCSK7	Q16549	785 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	LRRC73	Q5JTD7	316 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	GDPD4	Q6W3E5	623 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	ARHGEF18	Q6ZSZ5	1173 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	PARS2	Q7L3T8	475 aa	Known RBP	13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	KDELC2	Q7Z4H8	507 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	JAML	Q86YT9	394 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	KLHDC8B	Q8IXV7	354 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	CCDC89	Q8N998	374 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	MRGPRX2	Q96LB1	330 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	KLHL32	Q96NJ5	620 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	TUBB2B	Q9BVA1	445 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	TDRD1	Q9BXT4	1180 aa	Known RBP	13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	TPSD1	Q9BZJ3	242 aa		13.63	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms