RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 CASC3O15234 703 aaKnown RBP11.82□□□□□ -0.52
VTI1A-208ENST00000494728 KDELR3O43731 214 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 AP1G1O43747 822 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 CREB3O43889 395 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 MAGEC1O60732 1142 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 PIAS2O75928 621 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 NEBLO76041 1014 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 ACP1P24666 158 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 EPHB2P29323 1055 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 IGFALSP35858 605 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 INSM1Q01101 510 aaPredicted RBP11.82□□□□□ -0.52
VTI1A-208ENST00000494728 TARDBPQ13148 414 aaKnown RBP eCLIP11.82□□□□□ -0.52
VTI1A-208ENST00000494728 POLD3Q15054 466 aaPredicted RBP11.82□□□□□ -0.52
VTI1A-208ENST00000494728 ZNF805Q5CZA5 627 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 KIAA1161Q6NSJ0 714 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 SCYL2Q6P3W7 929 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 Q6ZSR6 202 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 NYAP1Q6ZVC0 841 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 TMPRSS12Q86WS5 348 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 OR4C6Q8NH72 309 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 KLHL32Q96NJ5 620 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 SLC17A9Q9BYT1 436 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 LHX3Q9UBR4 397 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 PIEZO2Q9H5I5 2752 aa11.82□□□□□ -0.52
VTI1A-208ENST00000494728 TMCO5BA8MYB1 307 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 RASA4BC9J798 803 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 RASA4O43374 803 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 BUB1O43683 1085 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 TLX3O43711 291 aaPredicted RBP11.81□□□□□ -0.52
VTI1A-208ENST00000494728 PIGNO95427 931 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 FERP16591 822 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 CKMT2P17540 419 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 ETFBP38117 255 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 RPS21P63220 83 aaKnown RBP11.81□□□□□ -0.52
VTI1A-208ENST00000494728 MYLK3Q32MK0 819 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 EFHC2Q5JST6 749 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 ACAD10Q6JQN1 1059 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 TMC6Q7Z403 805 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 PLPP6Q8IY26 295 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 RBFAQ8N0V3 343 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 PDCD7Q8N8D1 485 aaKnown RBP11.81□□□□□ -0.52
VTI1A-208ENST00000494728 ZNF548Q8NEK5 533 aaPredicted RBP11.81□□□□□ -0.52
VTI1A-208ENST00000494728 ANKRD20A12PQ8NF67 263 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 CNPY3Q9BT09 278 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 C1QTNF2Q9BXJ5 285 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 TTYH3Q9C0H2 523 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 TCEAL2Q9H3H9 227 aaPredicted RBP11.81□□□□□ -0.52
VTI1A-208ENST00000494728 PDFQ9HBH1 243 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 RTN4Q9NQC3 1192 aaKnown RBP11.81□□□□□ -0.52
VTI1A-208ENST00000494728 DNAJC28Q9NX36 388 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 ARHGEF17Q96PE2 2063 aaPredicted RBP11.81□□□□□ -0.52
VTI1A-208ENST00000494728 TENM4Q6N022 2769 aa11.81□□□□□ -0.52
VTI1A-208ENST00000494728 SPTY2D1-AS1A0A0U1RR47 76 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 CXorf51AA0A1B0GTR3 108 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 WASH4PA8MWX3 477 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 J3KR12 359 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 C1SP09871 688 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 JUPP14923 745 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 NME1P15531 152 aaKnown RBP11.8□□□□□ -0.52
VTI1A-208ENST00000494728 CDK11BP21127 795 aaKnown RBP11.8□□□□□ -0.52
VTI1A-208ENST00000494728 RGRP47804 291 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 SNRPD1P62314 119 aaKnown RBP11.8□□□□□ -0.52
VTI1A-208ENST00000494728 EIF2B5Q13144 721 aaKnown RBP11.8□□□□□ -0.52
VTI1A-208ENST00000494728 ZNF211Q13398 564 aaPredicted RBP11.8□□□□□ -0.52
VTI1A-208ENST00000494728 MAMLD1Q13495 774 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 SERINC3Q13530 473 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 CYTH1Q15438 398 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 ARHGAP36Q6ZRI8 547 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 ZNF571Q7Z3V5 609 aaPredicted RBP11.8□□□□□ -0.52
VTI1A-208ENST00000494728 ZSWIM9Q86XI8 627 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 ZNF354CQ86Y25 554 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 NPWQ8N729 165 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 HNRNPLLQ8WVV9 542 aaKnown RBP11.8□□□□□ -0.52
VTI1A-208ENST00000494728 RFFLQ8WZ73 363 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 CELF6Q96J87 481 aaKnown RBP11.8□□□□□ -0.52
VTI1A-208ENST00000494728 APOLD1Q96LR9 279 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 NSMCE3Q96MG7 304 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 GDAP1L1Q96MZ0 367 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 NAP1L5Q96NT1 182 aaPredicted RBP11.8□□□□□ -0.52
VTI1A-208ENST00000494728 KCTD15Q96SI1 283 aaPredicted RBP11.8□□□□□ -0.52
VTI1A-208ENST00000494728 SNRNP25Q9BV90 132 aaKnown RBP11.8□□□□□ -0.52
VTI1A-208ENST00000494728 LRRC19Q9H756 370 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 MFHAS1Q9Y4C4 1052 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 PCDHB1Q9Y5F3 818 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 HS3ST3A1Q9Y663 406 aa11.8□□□□□ -0.52
VTI1A-208ENST00000494728 SCN8AQ9UQD0 1980 aa11.79□□□□□ -0.52
VTI1A-208ENST00000494728 SETXQ7Z333 2677 aaKnown RBP11.79□□□□□ -0.52
VTI1A-208ENST00000494728 TSPAN6O43657 245 aa11.79□□□□□ -0.52
VTI1A-208ENST00000494728 MBD3O95983 291 aa11.79□□□□□ -0.52
VTI1A-208ENST00000494728 TCF4P15884 667 aa11.79□□□□□ -0.52
VTI1A-208ENST00000494728 TIMP2P16035 220 aa11.79□□□□□ -0.52
VTI1A-208ENST00000494728 HNF1BP35680 557 aa11.79□□□□□ -0.52
VTI1A-208ENST00000494728 GEMIN4P57678 1058 aaKnown RBP11.79□□□□□ -0.52
VTI1A-208ENST00000494728 PFN3P60673 137 aa11.79□□□□□ -0.52
VTI1A-208ENST00000494728 RHOAP61586 193 aa11.79□□□□□ -0.52
VTI1A-208ENST00000494728 SEMG2Q02383 582 aa11.79□□□□□ -0.52
VTI1A-208ENST00000494728 CCDC15Q0P6D6 951 aa11.79□□□□□ -0.52
VTI1A-208ENST00000494728 PDE1CQ14123 709 aaPredicted RBP11.79□□□□□ -0.52
VTI1A-208ENST00000494728 KCTD16Q68DU8 428 aa11.79□□□□□ -0.52
VTI1A-208ENST00000494728 PLEKHA7Q6IQ23 1121 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms