RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 DUSP3P51452 185 aaPredicted RBP12.84□□□□□ -0.35
SKA1-205ENST00000494518 SLC20A2Q08357 652 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 EIF2B5Q13144 721 aaKnown RBP12.84□□□□□ -0.35
SKA1-205ENST00000494518 CCDC14Q49A88 953 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 ARHGAP40Q5TG30 622 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 FOXR1Q6PIV2 292 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 VPS36Q86VN1 386 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 DCP2Q8IU60 420 aaKnown RBP12.84□□□□□ -0.35
SKA1-205ENST00000494518 CCDC185Q8N715 623 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 ZNF248Q8NDW4 579 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 SLC30A5Q8TAD4 765 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 GPT2Q8TD30 523 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 ARHGEF2Q92974 986 aaKnown RBP12.84□□□□□ -0.35
SKA1-205ENST00000494518 IFT43Q96FT9 208 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 ATXN7L3BQ96GX2 97 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 DUSP23Q9BVJ7 150 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 SYNDIG1Q9H7V2 258 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 PPARGC1AQ9UBK2 798 aaKnown RBP12.84□□□□□ -0.35
SKA1-205ENST00000494518 OR12D3Q9UGF7 316 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 PNMA8BQ9ULN7 279 aaPredicted RBP12.84□□□□□ -0.35
SKA1-205ENST00000494518 SATB2Q9UPW6 733 aa12.84□□□□□ -0.35
SKA1-205ENST00000494518 ASH1LQ9NR48 2969 aaKnown RBP12.83□□□□□ -0.36
SKA1-205ENST00000494518 A0A1W2PNU3 283 aaPredicted RBP12.83□□□□□ -0.36
SKA1-205ENST00000494518 MUSKO15146 869 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 AP1G1O43747 822 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 MMP20O60882 483 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 LRIG2O94898 1065 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 CHRNB2P17787 502 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 SDC4P31431 198 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 ADRA1BP35368 520 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 IGFALSP35858 605 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 ARL13BQ3SXY8 428 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 ZNF805Q5CZA5 627 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 PERM1Q5SV97 790 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 MANEALQ5VSG8 457 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 ZCCHC8Q6NZY4 707 aaKnown RBP12.83□□□□□ -0.36
SKA1-205ENST00000494518 PCSK4Q6UW60 755 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 NLRP14Q86W24 1093 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 FAM181AQ8N9Y4 354 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 KCNE4Q8WWG9 221 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 TBC1D31Q96DN5 1066 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 HIC2Q96JB3 615 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 VCPIP1Q96JH7 1222 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 ZNF578Q96N58 590 aaPredicted RBP12.83□□□□□ -0.36
SKA1-205ENST00000494518 IL12RB2Q99665 862 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 WRAP53Q9BUR4 548 aaKnown RBP12.83□□□□□ -0.36
SKA1-205ENST00000494518 C1QTNF2Q9BXJ5 285 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 STK33Q9BYT3 514 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 POLR1BQ9H9Y6 1135 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 NLRC4Q9NPP4 1024 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 EVA1BQ9NVM1 165 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 WDR70Q9NW82 654 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 APOBEC3BQ9UH17 382 aaKnown RBP12.83□□□□□ -0.36
SKA1-205ENST00000494518 NOCTQ9UK39 431 aaKnown RBP12.83□□□□□ -0.36
SKA1-205ENST00000494518 NEU3Q9UQ49 428 aa12.83□□□□□ -0.36
SKA1-205ENST00000494518 ARHGEF17Q96PE2 2063 aaPredicted RBP12.83□□□□□ -0.36
SKA1-205ENST00000494518 TEX51A0A1B0GUA7 166 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 KLK10O43240 276 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 TSPAN6O43657 245 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 BUB1O43683 1085 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 RAMP2O60895 175 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 GCATO75600 419 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 TMCC1O94876 653 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 GSRP00390 522 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 GP1BAP07359 652 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 CELA2BP08218 269 aaPredicted RBP12.82□□□□□ -0.36
SKA1-205ENST00000494518 PLEKP08567 350 aaPredicted RBP12.82□□□□□ -0.36
SKA1-205ENST00000494518 RHOQP17081 205 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 LSSP48449 732 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 MAPKAPK2P49137 400 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 THOP1P52888 689 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 ADKP55263 362 aaKnown RBP12.82□□□□□ -0.36
SKA1-205ENST00000494518 HDAC4P56524 1084 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 SNRPD1P62314 119 aaKnown RBP12.82□□□□□ -0.36
SKA1-205ENST00000494518 FMO1Q01740 532 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 POLD3Q15054 466 aaPredicted RBP12.82□□□□□ -0.36
SKA1-205ENST00000494518 NR0B2Q15466 257 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 ISXQ2M1V0 245 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 MYLK3Q32MK0 819 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 TAF1BQ53T94 588 aaPredicted RBP12.82□□□□□ -0.36
SKA1-205ENST00000494518 PRRT3Q5FWE3 981 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 TCP11X2Q5H9J9 407 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 ACBD5Q5T8D3 534 aaPredicted RBP12.82□□□□□ -0.36
SKA1-205ENST00000494518 NYAP1Q6ZVC0 841 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 PHACTR4Q8IZ21 702 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 PYROXD2Q8N2H3 581 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 ZNF843Q8N446 348 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 OR2AP1Q8NGE2 309 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 FAM174AQ8TBP5 190 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 FAM172AQ8WUF8 416 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 VOPP1Q96AW1 172 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 ISG20Q96AZ6 181 aaKnown RBP12.82□□□□□ -0.36
SKA1-205ENST00000494518 EXOC2Q96KP1 924 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 LENG8Q96PV6 779 aaPredicted RBP12.82□□□□□ -0.36
SKA1-205ENST00000494518 KLC2Q9H0B6 622 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 VPS16Q9H269 839 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 GANQ9H2C0 597 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 ASCL3Q9NQ33 180 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 MBNL1Q9NR56 388 aaKnown RBP12.82□□□□□ -0.36
SKA1-205ENST00000494518 FAM207AQ9NSI2 230 aaPredicted RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms