RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, human

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC88B-208	ENST00000492980	COL4A6	Q14031	1691 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	FAM95C	A0A1B0GW59	222 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	ACSL4	O60488	711 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	APOA4	P06727	396 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	SLC8A1	P32418	973 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	TUFM	P49411	452 aa	Known RBP	21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	SLC12A1	Q13621	1099 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	NEPRO	Q6NW34	567 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	NAPRT	Q6XQN6	538 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	LCA5	Q86VQ0	697 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	TREML1	Q86YW5	311 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	CFAP52	Q8N1V2	620 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	TMEM151A	Q8N4L1	468 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	AGAP11	Q8TF27	550 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	RILP	Q96NA2	401 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	TASP1	Q9H6P5	420 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	UXT	Q9UBK9	157 aa	Predicted RBP	21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	MID2	Q9UJV3	735 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	FBXO5	Q9UKT4	447 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	WFS1	O76024	890 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	GJB5	O95377	273 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	ESRRA	P11474	423 aa	Predicted RBP	21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	ALOX15	P16050	662 aa	Predicted RBP	21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	CD151	P48509	253 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	RAB10	P61026	200 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	TMCO4	Q5TGY1	634 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	RFWD3	Q6PCD5	774 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	CEP97	Q8IW35	865 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	CENPL	Q8N0S6	344 aa	Predicted RBP	21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	PDZD8	Q8NEN9	1154 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	RDH11	Q8TC12	318 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	OVCA2	Q8WZ82	227 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	IGSF21	Q96ID5	467 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	ZNF512	Q96ME7	567 aa	Predicted RBP	21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	CADM1	Q9BY67	442 aa	Known RBP	21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	ACE2	Q9BYF1	805 aa	Predicted RBP	21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	PDF	Q9HBH1	243 aa		21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	CPSF2	Q9P2I0	782 aa	Known RBP	21.32	■■□□□ 1
CCDC88B-208	ENST00000492980	ZNF840P	A6NDX5	716 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	TMEM114	B3SHH9	223 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	TRIM13	O60858	407 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	PARN	O95453	639 aa	Known RBP	21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	SEC24A	O95486	1093 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	SERPINA6	P08185	405 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	SBK3	P0C264	359 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	ATXN1L	P0C7T5	689 aa	Known RBP	21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	DNAJB1	P25685	340 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	SIRPB2	Q5JXA9	342 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	RINL	Q6ZS11	566 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	KCTD4	Q8WVF5	259 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	TSNARE1	Q96NA8	513 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	CCDC106	Q9BWC9	280 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	OXSM	Q9NWU1	459 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	LOC285095	A0A1B0GVY8	99 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	TK2	O00142	265 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	ZNF195	O14628	629 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	MUSK	O15146	869 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	GJB3	O75712	270 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	PAPSS2	O95340	614 aa	Predicted RBP	21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	COL6A2	P12110	1019 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	ALDH18A1	P54886	795 aa	Known RBP	21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	ZNF460	Q14592	562 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	ZYG11A	Q6WRX3	759 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	KIAA0408	Q6ZU52	694 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	OR13J1	Q8NGT2	312 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	CLSTN3	Q9BQT9	956 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	DNAJC28	Q9NX36	388 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	AFF4	Q9UHB7	1163 aa	Known RBP	21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	ACOT9	Q9Y305	439 aa		21.31	■■□□□ 1
CCDC88B-208	ENST00000492980	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	H2AFY	O75367	372 aa	Known RBP	21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	STMN1	P16949	149 aa		21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	HMGA1	P17096	107 aa	Known RBP	21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	NUMB	P49757	651 aa		21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	ICE2	Q659A1	982 aa		21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	SLC39A5	Q6ZMH5	540 aa		21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	SREK1	Q8WXA9	508 aa	Known RBP	21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	ELMO2	Q96JJ3	720 aa		21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	SEMA3C	Q99985	751 aa		21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	POLR1E	Q9GZS1	481 aa	Known RBP	21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	NACA2	Q9H009	215 aa		21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	FAM96A	Q9H5X1	160 aa		21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	SAGE1	Q9NXZ1	904 aa		21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	RUVBL2	Q9Y230	463 aa	Known RBP	21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	BPTF	Q12830	3046 aa		21.3	■■□□□ 1
CCDC88B-208	ENST00000492980	MROH6	A6NGR9	719 aa		21.29	■■□□□ 1
CCDC88B-208	ENST00000492980	AURKA	O14965	403 aa		21.29	■■□□□ 1
CCDC88B-208	ENST00000492980	COCH	O43405	550 aa		21.29	■■□□□ 1
CCDC88B-208	ENST00000492980	RABGAP1L	Q5R372	815 aa		21.29	■■□□□ 1
CCDC88B-208	ENST00000492980	HECTD3	Q5T447	861 aa		21.29	■■□□□ 1
CCDC88B-208	ENST00000492980	KIAA1841	Q6NSI8	718 aa		21.29	■■□□□ 1
CCDC88B-208	ENST00000492980	KLHDC10	Q6PID8	442 aa		21.29	■■□□□ 1
CCDC88B-208	ENST00000492980	STYX	Q8WUJ0	223 aa		21.29	■■□□□ 1
CCDC88B-208	ENST00000492980	GATA5	Q9BWX5	397 aa	Predicted RBP	21.29	■■□□□ 1
CCDC88B-208	ENST00000492980	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	21.29	■■□□□ 1
CCDC88B-208	ENST00000492980		A0A0D9SEW6	157 aa		21.29	■■□□□ 1
CCDC88B-208	ENST00000492980	GYG2	O15488	501 aa		21.29	■■□□□ 1
CCDC88B-208	ENST00000492980	GSC2	O15499	205 aa		21.29	■■□□□ 1
CCDC88B-208	ENST00000492980	ENO1	P06733	434 aa	Known RBP	21.29	■■□□□ 1

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms