RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 NPIPB4C9JG80 1138 aa3.29□□□□□ -1.88
SMC4-220ENST00000488017 J3KR12 359 aa3.29□□□□□ -1.88
SMC4-220ENST00000488017 GYS1P13807 737 aa3.29□□□□□ -1.88
SMC4-220ENST00000488017 SKIV2L2P42285 1042 aaKnown RBP3.29□□□□□ -1.88
SMC4-220ENST00000488017 SREBF2Q12772 1141 aa3.29□□□□□ -1.88
SMC4-220ENST00000488017 ZNF155Q12901 538 aaPredicted RBP3.29□□□□□ -1.88
SMC4-220ENST00000488017 FAM122CQ6P4D5 195 aa3.29□□□□□ -1.88
SMC4-220ENST00000488017 GALNT7Q86SF2 657 aa3.29□□□□□ -1.88
SMC4-220ENST00000488017 METTL27Q8N6F8 245 aaPredicted RBP3.29□□□□□ -1.88
SMC4-220ENST00000488017 RSC1A1Q92681 617 aa3.29□□□□□ -1.88
SMC4-220ENST00000488017 TTC14Q96N46 770 aa3.29□□□□□ -1.88
SMC4-220ENST00000488017 MVB12BQ9H7P6 319 aa3.29□□□□□ -1.88
SMC4-220ENST00000488017 GRHL1Q9NZI5 618 aa3.29□□□□□ -1.88
SMC4-220ENST00000488017 FBXO40Q9UH90 709 aa3.29□□□□□ -1.88
SMC4-220ENST00000488017 SLCO3A1Q9UIG8 710 aa3.29□□□□□ -1.88
SMC4-220ENST00000488017 PRSS21Q9Y6M0 314 aa3.29□□□□□ -1.88
SMC4-220ENST00000488017 A0A0G2JPF8 293 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.28□□□□□ -1.88
SMC4-220ENST00000488017 A0A1W2PNU3 283 aaPredicted RBP3.28□□□□□ -1.88
SMC4-220ENST00000488017 HNRNPCL3B7ZW38 293 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 ZNF587BE7ETH6 402 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 HNRNPCL1O60812 293 aaKnown RBP3.28□□□□□ -1.88
SMC4-220ENST00000488017 HNRNPCL4P0DMR1 293 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 SRCP12931 536 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 IFIT5Q13325 482 aaKnown RBP3.28□□□□□ -1.88
SMC4-220ENST00000488017 LPIN1Q14693 890 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 ARHGAP17Q68EM7 881 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 SCAIQ8N9R8 606 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 CNBD1Q8NA66 436 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 SLC2A12Q8TD20 617 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 TANKQ92844 425 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 EGFL8Q99944 293 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 ABCF3Q9NUQ8 709 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 SNX9Q9Y5X1 595 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 EID1Q9Y6B2 187 aa3.28□□□□□ -1.88
SMC4-220ENST00000488017 hDV102S1A0JD36 115 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 FAM90A18PA6NE21 464 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 FAM90A16PA6NEW6 464 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 FAM90A9PA6NNJ1 464 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 FAM90A5PA8MXJ8 464 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 FAM157AC9JC47 383 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 DNPH1O43598 174 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 TSPAN6O43657 245 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 CRLF1O75462 422 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 HEXIM1O94992 359 aaKnown RBP3.27□□□□□ -1.89
SMC4-220ENST00000488017 TFRCP02786 760 aaKnown RBP3.27□□□□□ -1.89
SMC4-220ENST00000488017 FAM90A15PP0C7V4 464 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 FAM90A14PP0C7W9 464 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 IL15P40933 162 aaPredicted RBP3.27□□□□□ -1.89
SMC4-220ENST00000488017 OASLQ15646 514 aaKnown RBP3.27□□□□□ -1.89
SMC4-220ENST00000488017 SUSD1Q6UWL2 747 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 SATL1Q86VE3 508 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 GALNT15Q8N3T1 639 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 ZNF248Q8NDW4 579 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 MCPH1Q8NEM0 835 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 OR4N2Q8NGD1 307 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 KCNJ9Q92806 393 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 C3orf30Q96M34 536 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 C17orf77Q96MU5 243 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 ZNF599Q96NL3 588 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 UPB1Q9UBR1 384 aa3.27□□□□□ -1.89
SMC4-220ENST00000488017 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 ANKRD62A6NC57 917 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 EFCAB8A8MWE9 144 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 TUBBP07437 444 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 RPS6KA3P51812 740 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 BRWD1-AS2P59051 145 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 TUBB4BP68371 445 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 SLC20A2Q08357 652 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 CHAF1AQ13111 956 aaPredicted RBP3.26□□□□□ -1.89
SMC4-220ENST00000488017 ZNF484Q5JVG2 852 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 LCE1CQ5T751 118 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 LCE1BQ5T7P3 118 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 MB21D2Q8IYB1 491 aaPredicted RBP3.26□□□□□ -1.89
SMC4-220ENST00000488017 CCDC105Q8IYK2 499 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 ADAD2Q8NCV1 583 aaKnown RBP3.26□□□□□ -1.89
SMC4-220ENST00000488017 DEPTORQ8TB45 409 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 ATOH1Q92858 354 aaPredicted RBP3.26□□□□□ -1.89
SMC4-220ENST00000488017 TMEM19Q96HH6 336 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 PIGSQ96S52 555 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 PRPF18Q99633 342 aaKnown RBP3.26□□□□□ -1.89
SMC4-220ENST00000488017 LRRC4Q9HBW1 653 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 TAAR2Q9P1P5 351 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 DHDHQ9UQ10 334 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 CEP83Q9Y592 693 aa3.26□□□□□ -1.89
SMC4-220ENST00000488017 PMS2P5A8MQ11 134 aa3.25□□□□□ -1.89
SMC4-220ENST00000488017 WNT9BO14905 357 aa3.25□□□□□ -1.89
SMC4-220ENST00000488017 CYP4B1P13584 511 aa3.25□□□□□ -1.89
SMC4-220ENST00000488017 PITX1P78337 314 aaPredicted RBP3.25□□□□□ -1.89
SMC4-220ENST00000488017 ZNF876PQ49A33 203 aa3.25□□□□□ -1.89
SMC4-220ENST00000488017 FAM209BQ5JX69 171 aa3.25□□□□□ -1.89
SMC4-220ENST00000488017 STXBP4Q6ZWJ1 553 aa3.25□□□□□ -1.89
SMC4-220ENST00000488017 DSG4Q86SJ6 1040 aa3.25□□□□□ -1.89
SMC4-220ENST00000488017 DPP9Q86TI2 863 aa3.25□□□□□ -1.89
SMC4-220ENST00000488017 SLC9B2Q86UD5 537 aa3.25□□□□□ -1.89
SMC4-220ENST00000488017 OTUD7AQ8TE49 926 aaPredicted RBP3.25□□□□□ -1.89
SMC4-220ENST00000488017 IPO4Q8TEX9 1081 aaKnown RBP3.25□□□□□ -1.89
SMC4-220ENST00000488017 ARRDC3Q96B67 414 aa3.25□□□□□ -1.89
SMC4-220ENST00000488017 WDR6Q9NNW5 1121 aaKnown RBP3.25□□□□□ -1.89
SMC4-220ENST00000488017 KLHL1Q9NR64 748 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms