RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 HOXC6P09630 235 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 DCTDP32321 178 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 MLH1P40692 756 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 CDKN2AP42771 156 aaKnown RBP6.26□□□□□ -1.41
USP40-213ENST00000483216 TRPC3Q13507 836 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 ZNF284Q2VY69 593 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 FSCBQ5H9T9 825 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 PDXDC1Q6P996 788 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 PATL1Q86TB9 770 aaKnown RBP6.26□□□□□ -1.41
USP40-213ENST00000483216 PALB2Q86YC2 1186 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 TNIP2Q8NFZ5 429 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 RASSF8Q8NHQ8 419 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 RUFY2Q8WXA3 655 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 PPM1EQ8WY54 764 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 EYA3Q99504 573 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 CNOT7Q9UIV1 285 aaKnown RBP6.26□□□□□ -1.41
USP40-213ENST00000483216 FGD5Q6ZNL6 1462 aa6.26□□□□□ -1.41
USP40-213ENST00000483216 ARID4BQ4LE39 1312 aaPredicted RBP6.25□□□□□ -1.41
USP40-213ENST00000483216 ARHGAP10A1A4S6 786 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 EBAG9O00559 213 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 LIASO43766 372 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 IFIT1P09914 478 aaKnown RBP6.25□□□□□ -1.41
USP40-213ENST00000483216 TTKP33981 857 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 THPOP40225 353 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 PMS2P54278 862 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 ABATP80404 500 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 EDRF1Q3B7T1 1238 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 UBAP2Q5T6F2 1119 aaKnown RBP6.25□□□□□ -1.41
USP40-213ENST00000483216 ATG9BQ674R7 924 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 MON1BQ7L1V2 547 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 MON1AQ86VX9 555 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 CHD1LQ86WJ1 897 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 FBXL14Q8N1E6 418 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 GDPD5Q8WTR4 605 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 TBC1D22AQ8WUA7 517 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 RNF183Q96D59 192 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 ELP4Q96EB1 424 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 NTPCRQ9BSD7 190 aaKnown RBP6.25□□□□□ -1.41
USP40-213ENST00000483216 NPFFR1Q9GZQ6 430 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 SLC32A1Q9H598 525 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 SPATS2LQ9NUQ6 558 aaKnown RBP6.25□□□□□ -1.41
USP40-213ENST00000483216 MYO6Q9UM54 1294 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 ARAP1Q96P48 1450 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 DNMBPQ6XZF7 1577 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 ADGRF5Q8IZF2 1346 aa6.25□□□□□ -1.41
USP40-213ENST00000483216 TEX22C9J3V5 150 aa6.24□□□□□ -1.41
USP40-213ENST00000483216 SLC25A17O43808 307 aa6.24□□□□□ -1.41
USP40-213ENST00000483216 FAM27E3Q08E93 113 aa6.24□□□□□ -1.41
USP40-213ENST00000483216 NFIL3Q16649 462 aa6.24□□□□□ -1.41
USP40-213ENST00000483216 PLEKHO1Q53GL0 409 aaPredicted RBP6.24□□□□□ -1.41
USP40-213ENST00000483216 TRILQ7L0X0 811 aa6.24□□□□□ -1.41
USP40-213ENST00000483216 NOC3LQ8WTT2 800 aaKnown RBP6.24□□□□□ -1.41
USP40-213ENST00000483216 MIB2Q96AX9 1013 aa6.24□□□□□ -1.41
USP40-213ENST00000483216 TMEM204Q9BSN7 226 aa6.24□□□□□ -1.41
USP40-213ENST00000483216 MSTO1Q9BUK6 570 aa6.24□□□□□ -1.41
USP40-213ENST00000483216 BEX4Q9NWD9 120 aaPredicted RBP6.24□□□□□ -1.41
USP40-213ENST00000483216 PDP2Q9P2J9 529 aa6.24□□□□□ -1.41
USP40-213ENST00000483216 PCDHGB5Q9Y5G0 923 aa6.24□□□□□ -1.41
USP40-213ENST00000483216 IFT140Q96RY7 1462 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 PABPN1LA6NDY0 278 aaKnown RBP6.23□□□□□ -1.41
USP40-213ENST00000483216 GAGE10A6NGK3 116 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 CBY3A6NI87 242 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 PROB1E7EW31 1015 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 ASAP2O43150 1006 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 PYGLP06737 847 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 NAGAP17050 411 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 HOXA11P31270 313 aaPredicted RBP6.23□□□□□ -1.41
USP40-213ENST00000483216 CCKARP32238 428 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 ANP32AP39687 249 aaKnown RBP6.23□□□□□ -1.41
USP40-213ENST00000483216 YWHAZP63104 245 aaKnown RBP6.23□□□□□ -1.41
USP40-213ENST00000483216 ADORA2A-AS1P86434 159 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 DSC1Q08554 894 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 HNF4GQ14541 408 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 LPIN1Q14693 890 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 SLC4A8Q2Y0W8 1093 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 DCAF6Q58WW2 860 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 ZNF766Q5HY98 468 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 TMTC1Q8IUR5 882 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 DENND6AQ8IWF6 608 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 IQCF1Q8N6M8 205 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 ZCCHC10Q8TBK6 192 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 FUZQ9BT04 418 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 INTS2Q9H0H0 1204 aaKnown RBP6.23□□□□□ -1.41
USP40-213ENST00000483216 CDT1Q9H211 546 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 HCN3Q9P1Z3 774 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 SLC13A4Q9UKG4 626 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 TBX20Q9UMR3 447 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 TOPBP1Q92547 1522 aa6.23□□□□□ -1.41
USP40-213ENST00000483216 CCDC196A0A1B0GTZ2 297 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 CLEC18AA5D8T8 446 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 CHL1O00533 1208 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 PTPN2P17706 415 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 RYKP34925 604 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 LIFRP42702 1097 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 CDH15P55291 814 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 CYP4A11Q02928 519 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 EGR4Q05215 589 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 MOB3CQ70IA8 216 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 CLEC18CQ8NCF0 446 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 HVCN1Q96D96 273 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms