RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 ZNF775Q96BV0 537 aaPredicted RBP5.42□□□□□ -1.54
PTPN4-209ENST00000469511 FCRL2Q96LA5 508 aaPredicted RBP5.42□□□□□ -1.54
PTPN4-209ENST00000469511 ZSCAN31Q96LW9 406 aaPredicted RBP5.42□□□□□ -1.54
PTPN4-209ENST00000469511 HEXIM2Q96MH2 286 aaKnown RBP5.42□□□□□ -1.54
PTPN4-209ENST00000469511 ZNF587Q96SQ5 575 aaPredicted RBP5.42□□□□□ -1.54
PTPN4-209ENST00000469511 CCDC3Q9BQI4 270 aa5.42□□□□□ -1.54
PTPN4-209ENST00000469511 RSRP1Q9BUV0 290 aa5.42□□□□□ -1.54
PTPN4-209ENST00000469511 TGIF2Q9GZN2 237 aa5.42□□□□□ -1.54
PTPN4-209ENST00000469511 CLPBQ9H078 707 aa5.42□□□□□ -1.54
PTPN4-209ENST00000469511 BLZF1Q9H2G9 400 aa5.42□□□□□ -1.54
PTPN4-209ENST00000469511 PREBQ9HCU5 417 aa5.42□□□□□ -1.54
PTPN4-209ENST00000469511 SLC39A2Q9NP94 309 aa5.42□□□□□ -1.54
PTPN4-209ENST00000469511 GPR27Q9NS67 375 aa5.42□□□□□ -1.54
PTPN4-209ENST00000469511 CCDC39Q9UFE4 941 aa5.42□□□□□ -1.54
PTPN4-209ENST00000469511 DMTF1Q9Y222 760 aa5.42□□□□□ -1.54
PTPN4-209ENST00000469511 HBS1LQ9Y450 684 aaKnown RBP5.42□□□□□ -1.54
PTPN4-209ENST00000469511 DOCK4Q8N1I0 1966 aa5.42□□□□□ -1.54
PTPN4-209ENST00000469511 CELSR2Q9HCU4 2923 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 MDC1Q14676 2089 aaKnown RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 ZNF106Q9H2Y7 1883 aaKnown RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 SHISA8B8ZZ34 492 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 H3BQV1 296 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 K7ERQ8 282 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 EIF3DO15371 548 aaKnown RBP eCLIP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 YY2O15391 372 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 AQP9O43315 295 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 STX6O43752 255 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 MAGEC1O60732 1142 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 SEMA7AO75326 666 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 LUC7L3O95232 432 aaKnown RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 MOCS2O96007 188 aaPredicted RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 PAK4O96013 591 aaPredicted RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 MT-CO1P00395 513 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 CSF2P04141 144 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 SRPRAP08240 638 aaKnown RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 SLFN14P0C7P3 912 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 TRIM49P0CI25 452 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 TRIM49CP0CI26 452 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 ALPPL2P10696 532 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 LIPCP11150 499 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 LCP1P13796 627 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 PDGFRAP16234 1089 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 PIK3CAP42336 1068 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 RGS7P49802 495 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 MAPK10P53779 464 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 ADKP55263 362 aaKnown RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 POLE2P56282 527 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 PITX1P78337 314 aaPredicted RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 PCDH1Q08174 1060 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 ADIGQ0VDE8 80 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 KCNAB2Q13303 367 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 MORC3Q14149 939 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 ELAVL3Q14576 367 aaKnown RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 ACCSLQ4AC99 568 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 SETMARQ53H47 684 aaPredicted RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 HS1BP3Q53T59 392 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 MS4A13Q5J8X5 152 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 FAM26FQ5R3K3 315 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 KCTD16Q68DU8 428 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 LYPD4Q6UWN0 246 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 PTAR1Q7Z6K3 402 aaPredicted RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 HORMAD1Q86X24 394 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 SRRM1Q8IYB3 904 aaKnown RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 LGI2Q8N0V4 545 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 SDR16C5Q8N3Y7 309 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 TAS1R2Q8TE23 839 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 NUDT8Q8WV74 236 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 ALG14Q96F25 216 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 LIN37Q96GY3 246 aaPredicted RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 CDK5RAP1Q96SZ6 601 aaKnown RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 KLF6Q99612 283 aaPredicted RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 BOCQ9BWV1 1114 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 LACRTQ9GZZ8 138 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 MMRN2Q9H8L6 949 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 DMAC2Q9NW81 257 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 GULP1Q9UBP9 304 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 GGT7Q9UJ14 662 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 ACSL6Q9UKU0 697 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 CEP83Q9Y592 693 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 PCDHGA7Q9Y5G6 932 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 SRPRBQ9Y5M8 271 aaKnown RBP5.41□□□□□ -1.54
PTPN4-209ENST00000469511 UBE4BO95155 1302 aa5.41□□□□□ -1.54
PTPN4-209ENST00000469511 CRYBG3Q68DQ2 2970 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 SPTY2D1-AS1A0A0U1RR47 76 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 NEMP2A6NFY4 417 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 H3BRJ5 948 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 SPTLC2O15270 562 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 NKX2-8O15522 239 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 SMAD6O43541 496 aaKnown RBP5.4□□□□□ -1.54
PTPN4-209ENST00000469511 DUX1O43812 170 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 EIF4EBP3O60516 100 aaPredicted RBP5.4□□□□□ -1.54
PTPN4-209ENST00000469511 TCEA3O75764 348 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 PCDH8O95206 1070 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 LATS1O95835 1130 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 KRT7P08729 469 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 ESRRAP11474 423 aaPredicted RBP5.4□□□□□ -1.54
PTPN4-209ENST00000469511 CCL4P13236 92 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 NME1P15531 152 aaKnown RBP5.4□□□□□ -1.54
PTPN4-209ENST00000469511 EPHA1P21709 976 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 HNRNPA2B1P22626 353 aaKnown RBP5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms