RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 ULBP1Q9BZM6 244 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 SEMA4BQ9NPR2 832 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 MIEF1Q9NQG6 463 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 ABCC13Q9NSE7 274 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 IPPQ9Y573 584 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 CKMP06732 381 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 ITGB6P18564 788 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 PCBP1Q15365 356 aaKnown RBP eCLIP19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 AMIGO2Q86SJ2 522 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 CAPSLQ8WWF8 208 aa19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 RCOR3Q9P2K3 495 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-204ENST00000463837 PRR23AA6NEV1 266 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 OR1E1P30953 314 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 HPCAL1P37235 193 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 CCNHP51946 323 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 STXBP5Q5T5C0 1151 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 GPR107Q5VW38 600 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 CPT1BQ92523 772 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 FGFBP2Q9BYJ0 223 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 KLHL28Q9NXS3 571 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 SPATA2Q9UM82 520 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 TAF4O00268 1085 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 PGAM4Q8N0Y7 254 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 CARNMT1Q8N4J0 409 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 CNTD1Q8N815 330 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 MAB21L3Q8N8X9 362 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 LEMD2Q8NC56 503 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 PDPRQ8NCN5 879 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 FBXO30Q8TB52 745 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 FAM126AQ9BYI3 521 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 PRDM12Q9H4Q4 367 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 XPR1Q9UBH6 696 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 CPA4Q9UI42 421 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 PADI4Q9UM07 663 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 MRPL42Q9Y6G3 142 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 DISP2A7MBM2 1401 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 CBX4O00257 560 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 RNASEH1O60930 286 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 TCF3P15923 654 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 NELFEP18615 380 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 TFEBP19484 476 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 TFAP2DQ7Z6R9 452 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 HELQQ8TDG4 1101 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 DEPDC7Q96QD5 511 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 SPRTNQ9H040 489 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 RHOJQ9H4E5 214 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 FESP07332 822 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 MBL2P11226 248 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 DGKAP23743 735 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 RETSATQ6NUM9 610 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 POTEHQ6S545 545 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 BPIFB6Q8NFQ5 453 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 MCOLN3Q8TDD5 553 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 ZFP42Q96MM3 310 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 CLEC4MQ9H2X3 399 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 MAGEL2Q9UJ55 1249 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 PCDHB5Q9Y5E4 795 aa19.17■□□□□ 0.66
CCDC88B-204ENST00000463837 BCLAF3A2AJT9 711 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 TRIM43BA6NCK2 446 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 NPR3P17342 541 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 FMO4P31512 558 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 INTS11Q5TA45 600 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 MTG1Q9BT17 334 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 CADM1Q9BY67 442 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 OSBPL6Q9BZF3 934 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 PCDH18Q9HCL0 1135 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 ZMYM5Q9UJ78 669 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 TMA7Q9Y2S6 64 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 TRMUO75648 421 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 ABCB1P08183 1280 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 ATP6V0D1P61421 351 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 PRKG2Q13237 762 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 KRT78Q8N1N4 520 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 CENPIQ92674 756 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 MAGEB10Q96LZ2 347 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 ARHGAP28Q9P2N2 729 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 TCRBV7S2A1N4TA0A589 114 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 SIN3BO75182 1162 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 CDKN2BP42772 138 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 MZT2BQ6NZ67 158 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 DEPDC4Q8N2C3 294 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 OR5B17Q8NGF7 314 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 PTTG2Q9NZH5 202 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 FAM198AQ9UFP1 575 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 CRYL1Q9Y2S2 319 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 TIMM13Q9Y5L4 95 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 GMPPBQ9Y5P6 360 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 SNCAIPQ9Y6H5 919 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 C3P01024 1663 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 AVILO75366 819 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 CDC42P60953 191 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 PRKCQQ04759 706 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 CCDC80Q76M96 950 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 SH3BP4Q9P0V3 963 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 PCDHB12Q9Y5F1 795 aa19.16■□□□□ 0.66
CCDC88B-204ENST00000463837 RTN3O95197 1032 aaPredicted RBP19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 OR56A5P0C7T3 313 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 SLC18A1P54219 525 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 EPHB3P54753 998 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 LSM3P62310 102 aaKnown RBP19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms