RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 KLHL32Q96NJ5 620 aa23.32■■□□□ 1.32
PTPN4-208ENST00000460289 CPEB1Q9BZB8 566 aaKnown RBP23.32■■□□□ 1.32
PTPN4-208ENST00000460289 ERVMER34-1Q9H9K5 563 aa23.32■■□□□ 1.32
PTPN4-208ENST00000460289 DFFAO00273 331 aa23.31■■□□□ 1.32
PTPN4-208ENST00000460289 YKT6O15498 198 aa23.31■■□□□ 1.32
PTPN4-208ENST00000460289 TSPAN6O43657 245 aa23.31■■□□□ 1.32
PTPN4-208ENST00000460289 CBFA2T3O75081 653 aa23.31■■□□□ 1.32
PTPN4-208ENST00000460289 MFAP3LO75121 409 aa23.31■■□□□ 1.32
PTPN4-208ENST00000460289 HNRNPA2B1P22626 353 aaKnown RBP23.31■■□□□ 1.32
PTPN4-208ENST00000460289 AKT2P31751 481 aa23.31■■□□□ 1.32
PTPN4-208ENST00000460289 SSR1P43307 286 aaKnown RBP23.31■■□□□ 1.32
PTPN4-208ENST00000460289 ARRB1P49407 418 aaPredicted RBP23.31■■□□□ 1.32
PTPN4-208ENST00000460289 ADKP55263 362 aaKnown RBP23.31■■□□□ 1.32
PTPN4-208ENST00000460289 TMEM259Q4ZIN3 620 aa23.31■■□□□ 1.32
PTPN4-208ENST00000460289 CNGA4Q8IV77 575 aa23.31■■□□□ 1.32
PTPN4-208ENST00000460289 ARHGAP12Q8IWW6 846 aa23.31■■□□□ 1.32
PTPN4-208ENST00000460289 OXR1Q8N573 874 aa23.31■■□□□ 1.32
PTPN4-208ENST00000460289 KLK6Q92876 244 aa23.31■■□□□ 1.32
PTPN4-208ENST00000460289 KLHDC7BQ96G42 594 aa23.31■■□□□ 1.32
PTPN4-208ENST00000460289 CCDC42Q96M95 316 aa23.31■■□□□ 1.32
PTPN4-208ENST00000460289 CDC6Q99741 560 aa23.31■■□□□ 1.32
PTPN4-208ENST00000460289 ZFR2Q9UPR6 939 aaKnown RBP23.31■■□□□ 1.32
PTPN4-208ENST00000460289 NEMP1O14524 444 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 PALMO75781 387 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 TRIM16O95361 564 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 FAM193AP78312 1265 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 SLC25A11Q02978 314 aaKnown RBP23.3■■□□□ 1.32
PTPN4-208ENST00000460289 IL10RBQ08334 325 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 FOXC1Q12948 553 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 RFTN1Q14699 578 aaPredicted RBP23.3■■□□□ 1.32
PTPN4-208ENST00000460289 INAVAQ3KP66 663 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 PRAMEF14Q5SWL7 426 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 SARM1Q6SZW1 724 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 TMCO3Q6UWJ1 677 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 TTC7BQ86TV6 843 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 TMEM145Q8NBT3 493 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 NETO2Q8NC67 525 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 FAM174AQ8TBP5 190 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 HCAR2Q8TDS4 363 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 VOPP1Q96AW1 172 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 SLC17A9Q9BYT1 436 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 TRIM5Q9C035 493 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 SP110Q9HB58 689 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 LHX3Q9UBR4 397 aa23.3■■□□□ 1.32
PTPN4-208ENST00000460289 TMEM253P0C7T8 217 aa23.29■■□□□ 1.32
PTPN4-208ENST00000460289 PRLRP16471 622 aa23.29■■□□□ 1.32
PTPN4-208ENST00000460289 AMPD1P23109 780 aa23.29■■□□□ 1.32
PTPN4-208ENST00000460289 GRK6P43250 576 aa23.29■■□□□ 1.32
PTPN4-208ENST00000460289 SGCGQ13326 291 aa23.29■■□□□ 1.32
PTPN4-208ENST00000460289 KRT81Q14533 505 aa23.29■■□□□ 1.32
PTPN4-208ENST00000460289 SEL1L3Q68CR1 1132 aa23.29■■□□□ 1.32
PTPN4-208ENST00000460289 GLRX5Q86SX6 157 aa23.29■■□□□ 1.32
PTPN4-208ENST00000460289 NPWQ8N729 165 aa23.29■■□□□ 1.32
PTPN4-208ENST00000460289 CSPG4P5Q96PW8 444 aa23.29■■□□□ 1.32
PTPN4-208ENST00000460289 NHEJ1Q9H9Q4 299 aaPredicted RBP23.29■■□□□ 1.32
PTPN4-208ENST00000460289 RCOR3Q9P2K3 495 aaPredicted RBP23.29■■□□□ 1.32
PTPN4-208ENST00000460289 DKK3Q9UBP4 350 aa23.29■■□□□ 1.32
PTPN4-208ENST00000460289 IPO11Q9UI26 975 aaKnown RBP23.29■■□□□ 1.32
PTPN4-208ENST00000460289 HS3ST3A1Q9Y663 406 aa23.29■■□□□ 1.32
PTPN4-208ENST00000460289 AKR1B15C9JRZ8 316 aaPredicted RBP23.28■■□□□ 1.32
PTPN4-208ENST00000460289 PROSCO94903 275 aa23.28■■□□□ 1.32
PTPN4-208ENST00000460289 CSNK1DP48730 415 aa23.28■■□□□ 1.32
PTPN4-208ENST00000460289 SUOXP51687 545 aa23.28■■□□□ 1.32
PTPN4-208ENST00000460289 TXNRD3NBQ6F5E7 133 aa23.28■■□□□ 1.32
PTPN4-208ENST00000460289 EXOC2Q96KP1 924 aa23.28■■□□□ 1.32
PTPN4-208ENST00000460289 CHP1Q99653 195 aa23.28■■□□□ 1.32
PTPN4-208ENST00000460289 PACSIN1Q9BY11 444 aa23.28■■□□□ 1.32
PTPN4-208ENST00000460289 PCDH18Q9HCL0 1135 aa23.28■■□□□ 1.32
PTPN4-208ENST00000460289 CABIN1Q9Y6J0 2220 aa23.28■■□□□ 1.32
PTPN4-208ENST00000460289 PAK4O96013 591 aaPredicted RBP23.27■■□□□ 1.32
PTPN4-208ENST00000460289 SERPINB6P35237 376 aa23.27■■□□□ 1.32
PTPN4-208ENST00000460289 ABL2P42684 1182 aa23.27■■□□□ 1.32
PTPN4-208ENST00000460289 RXRGP48443 463 aa23.27■■□□□ 1.32
PTPN4-208ENST00000460289 CDH6P55285 790 aa23.27■■□□□ 1.32
PTPN4-208ENST00000460289 IL9RQ01113 521 aa23.27■■□□□ 1.32
PTPN4-208ENST00000460289 NSUN2Q08J23 767 aaKnown RBP eCLIP23.27■■□□□ 1.32
PTPN4-208ENST00000460289 SPATS2Q86XZ4 545 aaKnown RBP23.27■■□□□ 1.32
PTPN4-208ENST00000460289 BAHD1Q8TBE0 780 aaPredicted RBP23.27■■□□□ 1.32
PTPN4-208ENST00000460289 ASB12Q8WXK4 309 aa23.27■■□□□ 1.32
PTPN4-208ENST00000460289 ZNF641Q96N77 438 aaPredicted RBP23.27■■□□□ 1.32
PTPN4-208ENST00000460289 ZNF599Q96NL3 588 aa23.27■■□□□ 1.32
PTPN4-208ENST00000460289 TUBGCP5Q96RT8 1024 aa23.27■■□□□ 1.32
PTPN4-208ENST00000460289 MYOCQ99972 504 aa23.27■■□□□ 1.32
PTPN4-208ENST00000460289 CINPQ9BW66 212 aaPredicted RBP23.27■■□□□ 1.32
PTPN4-208ENST00000460289 C1QTNF2Q9BXJ5 285 aa23.27■■□□□ 1.32
PTPN4-208ENST00000460289 SUV39H2Q9H5I1 410 aa23.27■■□□□ 1.32
PTPN4-208ENST00000460289 APOBEC2Q9Y235 224 aaKnown RBP23.27■■□□□ 1.32
PTPN4-208ENST00000460289 CA5BQ9Y2D0 317 aa23.27■■□□□ 1.32
PTPN4-208ENST00000460289 AREL1O15033 823 aa23.26■■□□□ 1.31
PTPN4-208ENST00000460289 INSIG1O15503 277 aa23.26■■□□□ 1.31
PTPN4-208ENST00000460289 ITGAVP06756 1048 aa23.26■■□□□ 1.31
PTPN4-208ENST00000460289 THEGLP0DJG4 465 aa23.26■■□□□ 1.31
PTPN4-208ENST00000460289 XPAP23025 273 aaPredicted RBP23.26■■□□□ 1.31
PTPN4-208ENST00000460289 RENBPP51606 427 aa23.26■■□□□ 1.31
PTPN4-208ENST00000460289 TBX2Q13207 712 aaPredicted RBP23.26■■□□□ 1.31
PTPN4-208ENST00000460289 TMCO4Q5TGY1 634 aa23.26■■□□□ 1.31
PTPN4-208ENST00000460289 ARHGAP36Q6ZRI8 547 aa23.26■■□□□ 1.31
PTPN4-208ENST00000460289 SRLQ86TD4 932 aa23.26■■□□□ 1.31
PTPN4-208ENST00000460289 TSEN2Q8NCE0 465 aaKnown RBP23.26■■□□□ 1.31
PTPN4-208ENST00000460289 FAM71BQ8TC56 605 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms