RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 TMCO4Q5TGY1 634 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 LRRC8BQ6P9F7 803 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 CAPN12Q6ZSI9 719 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 ZNF534Q76KX8 674 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 OTOP3Q7RTS5 596 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 CCDC117Q8IWD4 279 aaPredicted RBP8.2□□□□□ -1.1
CCDC39-201ENST00000442201 CARNMT1Q8N4J0 409 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.2□□□□□ -1.1
CCDC39-201ENST00000442201 ANKK1Q8NFD2 765 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 DDI1Q8WTU0 396 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 USP13Q92995 863 aaPredicted RBP8.2□□□□□ -1.1
CCDC39-201ENST00000442201 ZNF599Q96NL3 588 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 ROPN1BQ9BZX4 212 aaPredicted RBP8.2□□□□□ -1.1
CCDC39-201ENST00000442201 MUC3BQ9H195 1237 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 LRRC40Q9H9A6 602 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 ROPN1Q9HAT0 212 aaPredicted RBP8.2□□□□□ -1.1
CCDC39-201ENST00000442201 ATP13A1Q9HD20 1204 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 DZANK1Q9NVP4 752 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 SLC12A4Q9UP95 1085 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 CCL26Q9Y258 94 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 RANBP2P49792 3224 aaKnown RBP8.2□□□□□ -1.1
CCDC39-201ENST00000442201 RFXAPO00287 272 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 RASGRF2O14827 1237 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 DIAPH2O60879 1101 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 SUN1O94901 812 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 CYBBP04839 570 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 HOXD9P28356 352 aaPredicted RBP8.2□□□□□ -1.1
CCDC39-201ENST00000442201 MPP7Q5T2T1 576 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 KCTD11Q693B1 232 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 OR52E8Q6IFG1 317 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 CXorf57Q6NSI4 855 aaKnown RBP8.2□□□□□ -1.1
CCDC39-201ENST00000442201 ZNF783Q6ZMS7 281 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 C3orf62Q6ZUJ4 267 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 BBS5Q8N3I7 341 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 TEX26Q8N6G2 289 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 OR52K2Q8NGK3 314 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 ING5Q8WYH8 240 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 ARL8AQ96BM9 186 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 OXNAD1Q96HP4 312 aaPredicted RBP8.2□□□□□ -1.1
CCDC39-201ENST00000442201 ZNF419Q96HQ0 510 aaPredicted RBP8.2□□□□□ -1.1
CCDC39-201ENST00000442201 NAF1Q96HR8 494 aaKnown RBP8.2□□□□□ -1.1
CCDC39-201ENST00000442201 MLPHQ9BV36 600 aaPredicted RBP8.2□□□□□ -1.1
CCDC39-201ENST00000442201 TMBIM4Q9HC24 238 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 NT5MQ9NPB1 228 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 MAD1L1Q9Y6D9 718 aa8.2□□□□□ -1.1
CCDC39-201ENST00000442201 SMIM23A6NLE4 172 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 SPAG6O75602 509 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 CEBPBP17676 345 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 SSTR1P30872 391 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 GEMP55040 296 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 ITKQ08881 620 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 KCNC3Q14003 757 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 SPARCL1Q14515 664 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 ZNF235Q14590 738 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 KRT72Q14CN4 511 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 RNF219Q5W0B1 726 aaPredicted RBP8.19□□□□□ -1.1
CCDC39-201ENST00000442201 NAPEPLDQ6IQ20 393 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 PACS1Q6VY07 963 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 DNAAF3Q8N9W5 541 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 NACC2Q96BF6 587 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 SIGLEC10Q96LC7 697 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 WDR83Q9BRX9 315 aaKnown RBP8.19□□□□□ -1.1
CCDC39-201ENST00000442201 SLC25A51Q9H1U9 297 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 IGFLR1Q9H665 355 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 UBP1Q9NZI7 540 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 ZC3H7BQ9UGR2 993 aaKnown RBP8.19□□□□□ -1.1
CCDC39-201ENST00000442201 BAIAP2L1Q9UHR4 511 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 SDR42E2A6NKP2 422 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 AP3B1O00203 1094 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 KDELR3O43731 214 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 USP12O75317 370 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 PRAMEF12O95522 483 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 HOXD12P35452 270 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 SLCO1A2P46721 670 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 NUMBP49757 651 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 SESN2P58004 480 aaPredicted RBP8.19□□□□□ -1.1
CCDC39-201ENST00000442201 GPX6P59796 221 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 TNK2Q07912 1038 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 CBX2Q14781 532 aaPredicted RBP8.19□□□□□ -1.1
CCDC39-201ENST00000442201 TPGS1Q6ZTW0 290 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 LINC00523Q86TU6 105 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 IGDCC3Q8IVU1 814 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 ARID3BQ8IVW6 561 aaPredicted RBP8.19□□□□□ -1.1
CCDC39-201ENST00000442201 KLHDC8BQ8IXV7 354 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 VN1R2Q8NFZ6 395 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 SPATA22Q8NHS9 363 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 ITFG1Q8TB96 612 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 ATP6V1G3Q96LB4 118 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 ACE2Q9BYF1 805 aaPredicted RBP8.19□□□□□ -1.1
CCDC39-201ENST00000442201 PDFQ9HBH1 243 aa8.19□□□□□ -1.1
CCDC39-201ENST00000442201 UBA2Q9UBT2 640 aaPredicted RBP8.19□□□□□ -1.1
CCDC39-201ENST00000442201 EXOC1LA0A1B0GW35 172 aa8.18□□□□□ -1.1
CCDC39-201ENST00000442201 HMGB1P1B2RPK0 211 aaPredicted RBP8.18□□□□□ -1.1
CCDC39-201ENST00000442201 CBX4O00257 560 aa8.18□□□□□ -1.1
CCDC39-201ENST00000442201 TCEA3O75764 348 aa8.18□□□□□ -1.1
CCDC39-201ENST00000442201 PAPLNO95428 1278 aa8.18□□□□□ -1.1
CCDC39-201ENST00000442201 MDH1P40925 334 aaKnown RBP8.18□□□□□ -1.1
CCDC39-201ENST00000442201 LONRF1Q17RB8 773 aa8.18□□□□□ -1.1
CCDC39-201ENST00000442201 KCTD16Q68DU8 428 aa8.18□□□□□ -1.1
CCDC39-201ENST00000442201 CASC4Q6P4E1 433 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms