RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 CFAP46Q8IYW2 2715 aa13.2□□□□□ -0.3
VRK3-203ENST00000424804 LRRK1Q38SD2 2015 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 A0A1W2PQJ5 194 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 DDX3XO00571 662 aaKnown RBP eCLIP13.19□□□□□ -0.33e-12■■□□□ 11.9
VRK3-203ENST00000424804 AP1G1O43747 822 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 PAK4O96013 591 aaPredicted RBP13.19□□□□□ -0.3
VRK3-203ENST00000424804 MT-CO3P00414 261 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 FTLP02792 175 aaPredicted RBP13.19□□□□□ -0.3
VRK3-203ENST00000424804 GYPCP04921 128 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 PLEKP08567 350 aaPredicted RBP13.19□□□□□ -0.3
VRK3-203ENST00000424804 CKMT1AP12532 417 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 ADRB3P13945 408 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 ITGB7P26010 798 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 AKT2P31751 481 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 GKP32189 559 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 HNF1BP35680 557 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 PRKCIP41743 596 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 ABL2P42684 1182 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 PTPN9P43378 593 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 CCNHP51946 323 aaPredicted RBP13.19□□□□□ -0.3
VRK3-203ENST00000424804 SEMG2Q02383 582 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 ZNF542PQ5EBM4 170 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 RWDD4Q6NW29 188 aaKnown RBP13.19□□□□□ -0.3
VRK3-203ENST00000424804 PPP1R2P3Q6NXS1 205 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 Q6ZSR6 202 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 PARS2Q7L3T8 475 aaKnown RBP13.19□□□□□ -0.3
VRK3-203ENST00000424804 VPS36Q86VN1 386 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 PCDH20Q8N6Y1 951 aaKnown RBP13.19□□□□□ -0.3
VRK3-203ENST00000424804 SNIP1Q8TAD8 396 aaKnown RBP13.19□□□□□ -0.3
VRK3-203ENST00000424804 ARHGEF2Q92974 986 aaKnown RBP13.19□□□□□ -0.3
VRK3-203ENST00000424804 ISG20Q96AZ6 181 aaKnown RBP13.19□□□□□ -0.3
VRK3-203ENST00000424804 IFT43Q96FT9 208 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 HEPHQ9BQS7 1158 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 SYT11Q9BT88 431 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 C1QTNF2Q9BXJ5 285 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 SLC17A9Q9BYT1 436 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 OSBPL2Q9H1P3 480 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 NOL6Q9H6R4 1146 aaKnown RBP13.19□□□□□ -0.3
VRK3-203ENST00000424804 ATP13A1Q9HD20 1204 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 TMEM51Q9NW97 253 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 CNOT8Q9UFF9 292 aaKnown RBP13.19□□□□□ -0.3
VRK3-203ENST00000424804 GGT7Q9UJ14 662 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 CAPN11Q9UMQ6 739 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 FARP1Q9Y4F1 1045 aaPredicted RBP13.19□□□□□ -0.3
VRK3-203ENST00000424804 PCDHB1Q9Y5F3 818 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.19□□□□□ -0.3
VRK3-203ENST00000424804 KIF26BQ2KJY2 2108 aa13.19□□□□□ -0.3
VRK3-203ENST00000424804 CXorf51AA0A1B0GTR3 108 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 A0A1W2PNU3 283 aaPredicted RBP13.18□□□□□ -0.3
VRK3-203ENST00000424804 TCRBV5S1A1TA0A578 114 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 BRINP1O60477 761 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 PCDH8O95206 1070 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 SERPING1P05155 500 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 TPM1P09493 284 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 PSMA2P25787 234 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 NEK3P51956 506 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 HDAC4P56524 1084 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 GSCP56915 257 aaPredicted RBP13.18□□□□□ -0.3
VRK3-203ENST00000424804 RETSATQ6NUM9 610 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 STRADAQ7RTN6 431 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 DRC7Q8IY82 874 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 CCDC185Q8N715 623 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 FAM181AQ8N9Y4 354 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 IQCDQ96DY2 449 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 APOLD1Q96LR9 279 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 CCDC114Q96M63 670 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 DCBLD2Q96PD2 775 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 LENG8Q96PV6 779 aaPredicted RBP13.18□□□□□ -0.3
VRK3-203ENST00000424804 CALN1Q9BXU9 219 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 PARVAQ9NVD7 372 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 TMEM248Q9NWD8 314 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 OR12D3Q9UGF7 316 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 CLCA2Q9UQC9 943 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 AK5Q9Y6K8 562 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 ATMQ13315 3056 aa13.18□□□□□ -0.3
VRK3-203ENST00000424804 SPTY2D1-AS1A0A0U1RR47 76 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 IGLON5A6NGN9 336 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 C16orf96A6NNT2 1141 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 K7ESM1 405 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 SCAMP1O15126 338 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 CASC3O15234 703 aaKnown RBP13.17□□□□□ -0.3
VRK3-203ENST00000424804 FFAR2O15552 330 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 LZTS3O60299 673 aaPredicted RBP13.17□□□□□ -0.3
VRK3-203ENST00000424804 OPA1O60313 960 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 NEBLO76041 1014 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 LRIG2O94898 1065 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 CSF2P04141 144 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 ABCG1P45844 678 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 ZNF143P52747 638 aaPredicted RBP13.17□□□□□ -0.3
VRK3-203ENST00000424804 PFN3P60673 137 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 RPS21P63220 83 aaKnown RBP13.17□□□□□ -0.3
VRK3-203ENST00000424804 E2F1Q01094 437 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 CCDC15Q0P6D6 951 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 EIF2B5Q13144 721 aaKnown RBP13.17□□□□□ -0.3
VRK3-203ENST00000424804 TSR1Q2NL82 804 aaKnown RBP13.17□□□□□ -0.3
VRK3-203ENST00000424804 HGSNATQ68CP4 663 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 SPECC1LQ69YQ0 1117 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 PCSK4Q6UW60 755 aa13.17□□□□□ -0.3
VRK3-203ENST00000424804 KYAT3Q6YP21 454 aaKnown RBP13.17□□□□□ -0.3
VRK3-203ENST00000424804 TMC6Q7Z403 805 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms