RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ZNF567Q8N184 647 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 NETO2Q8NC67 525 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 KCTD4Q8WVF5 259 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 STARD8Q92502 1023 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 MFSD3Q96ES6 412 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 MROQ9BYG7 248 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 CYP3A43Q9HB55 503 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 PTPRHQ9HD43 1115 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 RNF146Q9NTX7 359 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 CROTQ9UKG9 612 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 SNX9Q9Y5X1 595 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 CPQQ9Y646 472 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 C1orf232A0A0U1RR37 186 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 MRASO14807 208 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 SPTLC1O15269 473 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 CLOCKO15516 846 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 PHGDHO43175 533 aaKnown RBP10.81□□□□□ -0.68
USP54-204ENST00000422491 GABBR2O75899 941 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 ITGB3P05106 788 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 SLC35E2BP0CK96 405 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 CXCL8P10145 99 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 GLUD2P49448 558 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 HLCSP50747 726 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 CCT8P50990 548 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 SLC7A2P52569 658 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 TRIM16LQ309B1 348 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 MAP7D1Q3KQU3 841 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 TBCELQ5QJ74 424 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 CHST15Q7LFX5 561 aaPredicted RBP10.81□□□□□ -0.68
USP54-204ENST00000422491 SPRED1Q7Z699 444 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 SCUBE3Q8IX30 993 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 CCDC185Q8N715 623 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 PDPRQ8NCN5 879 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 NSUN6Q8TEA1 469 aaKnown RBP10.81□□□□□ -0.68
USP54-204ENST00000422491 CYGBQ8WWM9 190 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 CENPIQ92674 756 aaPredicted RBP10.81□□□□□ -0.68
USP54-204ENST00000422491 ZUFSPQ96AP4 578 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 WNK4Q96J92 1243 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 SLC39A3Q9BRY0 314 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 C9orf16Q9BUW7 83 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 UNKQ9C0B0 810 aaKnown RBP10.81□□□□□ -0.68
USP54-204ENST00000422491 TMEM39BQ9GZU3 492 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 XPR1Q9UBH6 696 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 VANGL2Q9ULK5 521 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 FZD1Q9UP38 647 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 KPNA4O00629 521 aaPredicted RBP10.81□□□□□ -0.68
USP54-204ENST00000422491 NPHS1O60500 1241 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 NOL3O60936 208 aaKnown RBP10.81□□□□□ -0.68
USP54-204ENST00000422491 USP12O75317 370 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 SRP72O76094 671 aaKnown RBP10.81□□□□□ -0.68
USP54-204ENST00000422491 RASAL1O95294 804 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 BCL10O95999 233 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 SNRPB2P08579 225 aaKnown RBP10.81□□□□□ -0.68
USP54-204ENST00000422491 HSPA8P11142 646 aaKnown RBP10.81□□□□□ -0.68
USP54-204ENST00000422491 IDUAP35475 653 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 PTPN9P43378 593 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 NDST1P52848 882 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 MAPK10P53779 464 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 INCA1Q0VD86 236 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 PITRM1Q5JRX3 1037 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 MPZL3Q6UWV2 235 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 LAYNQ6UX15 382 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 KCNMB4Q86W47 210 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 ANKRD13AQ8IZ07 590 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 PYROXD2Q8N2H3 581 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 C12orf29Q8N999 325 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 SHCBP1Q8NEM2 672 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 AKT1S1Q96B36 256 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 SLC45A3Q96JT2 553 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 SCYL1Q96KG9 808 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 ZNF641Q96N77 438 aaPredicted RBP10.81□□□□□ -0.68
USP54-204ENST00000422491 ALPK1Q96QP1 1244 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 MTG1Q9BT17 334 aaPredicted RBP10.81□□□□□ -0.68
USP54-204ENST00000422491 SEZ6LQ9BYH1 1024 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 MRGBPQ9NV56 204 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 TLK1Q9UKI8 766 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 OAZ3Q9UMX2 235 aa10.81□□□□□ -0.68
USP54-204ENST00000422491 RUVBL2Q9Y230 463 aaKnown RBP10.81□□□□□ -0.68
USP54-204ENST00000422491 GOLGB1Q14789 3259 aaKnown RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 DHRS12A0PJE2 317 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 AQP12BA6NM10 295 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 NRP2O60462 931 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 SEC14L2O76054 403 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 PABPC1P11940 636 aaKnown RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 LRPAP1P30533 357 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 CAPGP40121 348 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 HADHAP40939 763 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 YAP1P46937 504 aaKnown RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 IREB2P48200 963 aaKnown RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 SEPT6Q14141 434 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 GOLGA7BQ2TAP0 167 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 PKDCCQ504Y2 493 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 CYBRD1Q53TN4 286 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 CNSTQ6PJW8 725 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 USP51Q70EK9 711 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 AQP12AQ8IXF9 295 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 CMTR2Q8IYT2 770 aaKnown RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 CCNYL1Q8N7R7 359 aa10.8□□□□□ -0.68
USP54-204ENST00000422491 DCPSQ96C86 337 aaKnown RBP10.8□□□□□ -0.68
USP54-204ENST00000422491 GPR78Q96P69 363 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms