RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 PSKH2Q96QS6 385 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 RBBP8Q99708 897 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 SLC13A1Q9BZW2 595 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 WWP1Q9H0M0 922 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 EML4Q9HC35 981 aaKnown RBP8.49□□□□□ -1.05
USP54-203ENST00000418501 UBP1Q9NZI7 540 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 OGNP20774 298 aaKnown RBP8.48□□□□□ -1.05
USP54-203ENST00000418501 LRRC14Q15048 493 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 MSS51Q4VC12 460 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 TMEM240Q5SV17 173 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 C6orf163Q5TEZ5 329 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 OTOP3Q7RTS5 596 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 TEX26Q8N6G2 289 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 TCP10LQ8TDR4 215 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 ASIC4Q96FT7 647 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 RAB3IPQ96QF0 476 aaPredicted RBP8.48□□□□□ -1.05
USP54-203ENST00000418501 GPR63Q9BZJ6 419 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 TLE6Q9H808 572 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 OSER1Q9NX31 292 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 MFHAS1Q9Y4C4 1052 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 SLCO1B7G3V0H7 640 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 CACNG3O60359 315 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 CCDC22O60826 627 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 FAM155BO75949 473 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 MYL2P10916 166 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 CYP2A6P11509 494 aaPredicted RBP8.48□□□□□ -1.05
USP54-203ENST00000418501 HMGA1P17096 107 aaKnown RBP8.48□□□□□ -1.05
USP54-203ENST00000418501 TBCCQ15814 346 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 HSP90AA5PQ58FG0 334 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 TSTD2Q5T7W7 516 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 FAM45BPQ6NSW5 357 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 SUGP1Q8IWZ8 645 aaKnown RBP8.48□□□□□ -1.05
USP54-203ENST00000418501 FAM45AQ8TCE6 357 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 BLOC1S5Q8TDH9 187 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 BCL7CQ8WUZ0 217 aaPredicted RBP8.48□□□□□ -1.05
USP54-203ENST00000418501 MCOLN1Q9GZU1 580 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 CTNNAL1Q9UBT7 734 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 PRKAG3Q9UGI9 489 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 TTC3P53804 2025 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 SMIM24O75264 130 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 F11P03951 625 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 LPOP22079 712 aaPredicted RBP8.48□□□□□ -1.05
USP54-203ENST00000418501 SERPINB4P48594 390 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 MNAT1P51948 309 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 TMEM173Q86WV6 379 aaPredicted RBP8.48□□□□□ -1.05
USP54-203ENST00000418501 LRRC34Q8IZ02 419 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 CELF5Q8N6W0 485 aaKnown RBP8.48□□□□□ -1.05
USP54-203ENST00000418501 BANPQ8N9N5 519 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 IGSF8Q969P0 613 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 FAR2Q96K12 515 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 APOL2Q9BQE5 337 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 MLPHQ9BV36 600 aaPredicted RBP8.48□□□□□ -1.05
USP54-203ENST00000418501 STOML2Q9UJZ1 356 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 TRIP11Q15643 1979 aa8.48□□□□□ -1.05
USP54-203ENST00000418501 CCL16O15467 120 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 BANF1O75531 89 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 RPP40O75818 363 aaKnown RBP8.47□□□□□ -1.05
USP54-203ENST00000418501 VAPBO95292 243 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 NFATC1O95644 943 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 POLR2EP19388 210 aaKnown RBP8.47□□□□□ -1.05
USP54-203ENST00000418501 ITGALP20701 1170 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 PTPN5P54829 565 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 IFT88Q13099 833 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 TAF1AQ15573 450 aaPredicted RBP8.47□□□□□ -1.05
USP54-203ENST00000418501 ALFQ53S48 1182 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 RFWD3Q6PCD5 774 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 SLC22A9Q8IVM8 553 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 GPATCH11Q8N954 259 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 SP7Q8TDD2 431 aaPredicted RBP8.47□□□□□ -1.05
USP54-203ENST00000418501 PDCD6IPQ8WUM4 868 aaKnown RBP8.47□□□□□ -1.05
USP54-203ENST00000418501 STN1Q9H668 368 aaKnown RBP8.47□□□□□ -1.05
USP54-203ENST00000418501 MAN1C1Q9NR34 630 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 SLC39A10Q9ULF5 831 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 ADAM12O43184 909 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 SERPINB5P36952 375 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 CSNK1DP48730 415 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 MNX1P50219 401 aaPredicted RBP8.47□□□□□ -1.05
USP54-203ENST00000418501 SFSWAPQ12872 951 aaKnown RBP8.47□□□□□ -1.05
USP54-203ENST00000418501 ZKSCAN8Q15776 578 aaPredicted RBP8.47□□□□□ -1.05
USP54-203ENST00000418501 ACCSLQ4AC99 568 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 KCTD11Q693B1 232 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 RSPO2Q6UXX9 243 aaPredicted RBP8.47□□□□□ -1.05
USP54-203ENST00000418501 C16orf59Q7L2K0 433 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 GLT6D1Q7Z4J2 308 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 GALNT7Q86SF2 657 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 SRLQ86TD4 932 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 PPM1EQ8WY54 764 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 SMG7Q92540 1137 aaKnown RBP8.47□□□□□ -1.05
USP54-203ENST00000418501 FAM111AQ96PZ2 611 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 TUBGCP5Q96RT8 1024 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 APPL1Q9UKG1 709 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.47□□□□□ -1.05
USP54-203ENST00000418501 USP12O75317 370 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 HSPA4LO95757 839 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 TPH1P17752 444 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 SAT1P21673 171 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 SLC26A3P40879 764 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 CCNFP41002 786 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 TTPAP49638 278 aa8.47□□□□□ -1.05
USP54-203ENST00000418501 ARFIP2P53365 341 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms