RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ZDHHC6Q9H6R6 413 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 VPS45Q9NRW7 570 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 WHRNQ9P202 907 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 RNF40O75150 1001 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 SEC31AO94979 1220 aaKnown RBP18.28■□□□□ 0.52
SDC1-203ENST00000403076 KLF8O95600 359 aaPredicted RBP18.28■□□□□ 0.52
SDC1-203ENST00000403076 PRKCHP24723 683 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 NTSR1P30989 418 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 CCNHP51946 323 aaPredicted RBP18.28■□□□□ 0.52
SDC1-203ENST00000403076 PLTPP55058 493 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 STARD6P59095 220 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 MRPS21P82921 87 aaKnown RBP18.28■□□□□ 0.52
SDC1-203ENST00000403076 SKOR1P84550 965 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 MPP3Q13368 585 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 SPARCL1Q14515 664 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 HLTFQ14527 1009 aaKnown RBP eCLIP18.28■□□□□ 0.52
SDC1-203ENST00000403076 TRADDQ15628 312 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 NCEH1Q6PIU2 408 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 KDELC2Q7Z4H8 507 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 PLPP6Q8IY26 295 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 GPR161Q8N6U8 529 aaKnown RBP18.28■□□□□ 0.52
SDC1-203ENST00000403076 MYRIPQ8NFW9 859 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 OR2A12Q8NGT7 310 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 PTPRN2Q92932 1015 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 NELL2Q99435 816 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 HEPHQ9BQS7 1158 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 MLPHQ9BV36 600 aaPredicted RBP18.28■□□□□ 0.52
SDC1-203ENST00000403076 TMEM245Q9H330 911 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 ANKZF1Q9H8Y5 726 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.28■□□□□ 0.52
SDC1-203ENST00000403076 KANSL1LA0AUZ9 987 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 ERI2A8K979 691 aaKnown RBP18.28■□□□□ 0.52
SDC1-203ENST00000403076 SYNCRIPO60506 623 aaKnown RBP18.28■□□□□ 0.52
SDC1-203ENST00000403076 SIN3BO75182 1162 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 MMP2P08253 660 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 GKP32189 559 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 WNT3AP56704 352 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 SARNPP82979 210 aaKnown RBP18.28■□□□□ 0.52
SDC1-203ENST00000403076 BCL2L1Q07817 233 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 CCINQ13939 588 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 LRRC32Q14392 662 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 NAA30Q147X3 362 aaPredicted RBP18.28■□□□□ 0.52
SDC1-203ENST00000403076 RNASEH2BQ5TBB1 312 aaKnown RBP18.28■□□□□ 0.52
SDC1-203ENST00000403076 CHST14Q8NCH0 376 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 PDCD6IPQ8WUM4 868 aaKnown RBP18.28■□□□□ 0.52
SDC1-203ENST00000403076 SEC14L1Q92503 715 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 ERLEC1Q96DZ1 483 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 IFT43Q96FT9 208 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 GORASP1Q9BQQ3 440 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 FSD1LQ9BXM9 530 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 LRRC40Q9H9A6 602 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 LTB4R2Q9NPC1 389 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 GDF3Q9NR23 364 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 PCDHGC4Q9Y5F7 938 aa18.28■□□□□ 0.52
SDC1-203ENST00000403076 FAM170BA6NMN3 283 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 AP2A1O95782 977 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 TPSB2P20231 275 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 CA4P22748 312 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 ZXDAP98168 799 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 CAV1Q03135 178 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 CUL1Q13616 776 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 KCNJ11Q14654 390 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 GRM3Q14832 879 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 STARD3Q14849 445 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 MORF4L2Q15014 288 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 TPSAB1Q15661 275 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 ANKRD22Q5VYY1 191 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 PPP1R21Q6ZMI0 780 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 HOOK3Q86VS8 718 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 STK40Q8N2I9 435 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 IL17RCQ8NAC3 791 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 TXNDC5Q8NBS9 432 aaKnown RBP18.27■□□□□ 0.51
SDC1-203ENST00000403076 RPLP0P6Q8NHW5 317 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 GRIN3AQ8TCU5 1115 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 OR8D1Q8WZ84 308 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 UHRF1Q96T88 793 aaPredicted RBP18.27■□□□□ 0.51
SDC1-203ENST00000403076 FICDQ9BVA6 458 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 ATP13A3Q9H7F0 1226 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 TBC1D17Q9HA65 648 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 LMAN1LQ9HAT1 526 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 GRHL1Q9NZI5 618 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 RAI2Q9Y5P3 530 aa18.27■□□□□ 0.51
SDC1-203ENST00000403076 TCRBV7S3A2A0A539 114 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 GOLGA8MH3BSY2 632 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 SMAPO00193 183 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 TARSP26639 723 aaKnown RBP18.26■□□□□ 0.51
SDC1-203ENST00000403076 SERPINA4P29622 427 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 CARSP49589 748 aaKnown RBP18.26■□□□□ 0.51
SDC1-203ENST00000403076 CDK16Q00536 496 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 ELF2Q15723 593 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 SLC14A2Q15849 920 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 C9orf64Q5T6V5 341 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 NAPEPLDQ6IQ20 393 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 HIBCHQ6NVY1 386 aaPredicted RBP18.26■□□□□ 0.51
SDC1-203ENST00000403076 KDELC1Q6UW63 502 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 LINC00523Q86TU6 105 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 CAMK1DQ8IU85 385 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 NAT8LQ8N9F0 302 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 RUBCNQ92622 972 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 MRGPRX2Q96LB1 330 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms