RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 AQP4P55087 323 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 LSM14AQ8ND56 463 aaKnown RBP11.95□□□□□ -0.5
SYNPO-202ENST00000394243 CERS2Q96G23 380 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 TAAR1Q96RJ0 339 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 NUP50Q9UKX7 468 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 CYB561D2O14569 222 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 SERPINF2P08697 491 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 FGRP09769 529 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 GABRB2P47870 512 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 SCN1BQ07699 218 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 PTGR2Q8N8N7 351 aaPredicted RBP11.94□□□□□ -0.5
SYNPO-202ENST00000394243 OR52L1Q8NGH7 329 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 LRRC19Q9H756 370 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 FKBP14Q9NWM8 211 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 TSPAN16Q9UKR8 245 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 DHRS7Q9Y394 339 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 ADAMTS12P58397 1594 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 H0Y858 1186 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 ITGA2BP08514 1039 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 PSMB4P28070 264 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 TKTL1P51854 596 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 TKFCQ3LXA3 575 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 LCN1P1Q5VSP4 162 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 THAP5Q7Z6K1 395 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 CDYL2Q8N8U2 506 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 UCKL1Q9NWZ5 548 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 STX16-NPEPL1H3BU86 382 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 CBX4O00257 560 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 STX16O14662 325 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 AVILO75366 819 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 NR2F6P10588 404 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 HNRNPLP14866 589 aaKnown RBP eCLIP11.94□□□□□ -0.5
SYNPO-202ENST00000394243 RHOAP61586 193 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 EFEMP1Q12805 493 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 BOP1Q14137 746 aaKnown RBP11.94□□□□□ -0.5
SYNPO-202ENST00000394243 GK5Q6ZS86 529 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 GLT6D1Q7Z4J2 308 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 TFAP2DQ7Z6R9 452 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 TTLL6Q8N841 843 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 SCAIQ8N9R8 606 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 SELENOMQ8WWX9 145 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 ZC3H10Q96K80 434 aaKnown RBP11.94□□□□□ -0.5
SYNPO-202ENST00000394243 PLA2G12BQ9BX93 195 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 UGT2B11O75310 529 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 LINC00032P0C843 101 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 STAG3L1P0CL83 205 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 ARP10275 920 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 ITGA2P17301 1181 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 RPL22P35268 128 aaKnown RBP11.94□□□□□ -0.5
SYNPO-202ENST00000394243 CEBPGP53567 150 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 UGT2B15P54855 530 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 KCTD8Q6ZWB6 473 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 FAM220AQ7Z4H9 259 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 SCUBE3Q8IX30 993 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 GALNT6Q8NCL4 622 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 TBCBQ99426 244 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 NARFQ9UHQ1 456 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 ZNF7P17097 686 aaPredicted RBP11.94□□□□□ -0.5
SYNPO-202ENST00000394243 SDC2P34741 201 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 TCF7P36402 384 aaPredicted RBP11.94□□□□□ -0.5
SYNPO-202ENST00000394243 MARCKSL1P49006 195 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 VBP1P61758 197 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 AMPD2Q01433 879 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 ACSM2AQ08AH3 577 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 ACSM2BQ68CK6 577 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 ILDR1Q86SU0 546 aaPredicted RBP11.94□□□□□ -0.5
SYNPO-202ENST00000394243 ACMSDQ8TDX5 336 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 KCTD4Q8WVF5 259 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 POF1BQ8WVV4 589 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 EDEM1Q92611 657 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 LPAR1Q92633 364 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 FBXO32Q969P5 355 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 TOP1MTQ969P6 601 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 CPB2Q96IY4 423 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 C1QTNF1Q9BXJ1 281 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 ACE2Q9BYF1 805 aaPredicted RBP11.94□□□□□ -0.5
SYNPO-202ENST00000394243 IRF2BPLQ9H1B7 796 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 CEP170Q5SW79 1584 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 PXDNLA1KZ92 1463 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 OR10H3O60404 316 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 RPS6KA4O75676 772 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 FBXO21O94952 628 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 TGM3Q08188 693 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 MTAPQ13126 283 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 CBWD6Q4V339 395 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 ADAM28Q9UKQ2 775 aa11.94□□□□□ -0.5
SYNPO-202ENST00000394243 MRPL42Q9Y6G3 142 aaKnown RBP11.94□□□□□ -0.5
SYNPO-202ENST00000394243 DCDC2CA8MYV0 355 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 DYNC1LI2O43237 492 aaPredicted RBP11.93□□□□□ -0.5
SYNPO-202ENST00000394243 MMP10P09238 476 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 SMCO1Q147U7 214 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 ZNF662Q6ZS27 426 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 RASSF5Q8WWW0 418 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 IL22Q9GZX6 179 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 ADGRE2Q9UHX3 823 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 RHOCP08134 193 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 ALDH4A1P30038 563 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 EARS2Q5JPH6 523 aaKnown RBP11.93□□□□□ -0.5
SYNPO-202ENST00000394243 RNF44Q7L0R7 432 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 SPATA6LQ8N4H0 392 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms