RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 CDRT15Q96T59 188 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 DCLK3Q9C098 648 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.58□□□□□ -0.4
VPS13A-204ENST00000376634 OGDHLQ9ULD0 1010 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 SLC6A2P23975 617 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 OAFQ86UD1 273 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 DSELQ8IZU8 1212 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 PPP1R14BQ96C90 147 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 CDADC1Q9BWV3 514 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 PIH1D1Q9NWS0 290 aaKnown RBP12.58□□□□□ -0.4
VPS13A-204ENST00000376634 IRGMA1A4Y4 181 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 SEMA3DO95025 777 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 NR2F1P10589 423 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 PAX7P23759 505 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 GSTT1P30711 240 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 SPIBQ01892 262 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 GRB14Q14449 540 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 VCPIP1Q96JH7 1222 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 GSDMCQ9BYG8 508 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 ALG9Q9H6U8 611 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 RSL24D1Q9UHA3 163 aaKnown RBP12.58□□□□□ -0.4
VPS13A-204ENST00000376634 IFNGP01579 166 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 TPH1P17752 444 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 CASP5P51878 434 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 SMU1Q2TAY7 513 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 PSMA8Q8TAA3 256 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 ZKSCAN4Q969J2 545 aaPredicted RBP12.58□□□□□ -0.4
VPS13A-204ENST00000376634 FNDC11Q9BVV2 318 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 SLC35C2Q9NQQ7 365 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 HOXC12P31275 282 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 GIT2Q14161 759 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 ALKBH2Q6NS38 261 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 ZCCHC9Q8N567 271 aaKnown RBP12.58□□□□□ -0.4
VPS13A-204ENST00000376634 ITCHQ96J02 903 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 MTG1Q9BT17 334 aaPredicted RBP12.58□□□□□ -0.4
VPS13A-204ENST00000376634 SAR1AQ9NR31 198 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 GMPPBQ9Y5P6 360 aa12.58□□□□□ -0.4
VPS13A-204ENST00000376634 SCN2AQ99250 2005 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 RLN1P04808 185 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 CDH3P22223 829 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 IGFALSP35858 605 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 GRIA3P42263 894 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 PYHIN1Q6K0P9 492 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 NYAP1Q6ZVC0 841 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 RGL4Q8IZJ4 473 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 KAT5Q92993 513 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 TAAR1Q96RJ0 339 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 RMI1Q9H9A7 625 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 KLQ9UEF7 1012 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 NDST1P52848 882 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 MAPK10P53779 464 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 CCSAPQ6IQ19 270 aaPredicted RBP12.57□□□□□ -0.4
VPS13A-204ENST00000376634 CCDC80Q76M96 950 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 DNERQ8NFT8 737 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 WDR60Q8WVS4 1066 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 VPS45Q9NRW7 570 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 SCAF8Q9UPN6 1271 aaKnown RBP12.57□□□□□ -0.4
VPS13A-204ENST00000376634 SERPINB7O75635 380 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 TGFB3P10600 412 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 ALADP13716 330 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 HTR1BP28222 390 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 CD86P42081 329 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 PGLYRP2Q96PD5 576 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 KCNN2Q9H2S1 579 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 TUBA8Q9NY65 449 aaPredicted RBP12.57□□□□□ -0.4
VPS13A-204ENST00000376634 TBC1D3BA6NDS4 549 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.57□□□□□ -0.4
VPS13A-204ENST00000376634 OPLAHO14841 1288 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 BPIFB6Q8NFQ5 453 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 ZNF75CPQ92670 426 aaPredicted RBP12.57□□□□□ -0.4
VPS13A-204ENST00000376634 WDR12Q9GZL7 423 aaKnown RBP12.57□□□□□ -0.4
VPS13A-204ENST00000376634 PFDN2Q9UHV9 154 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 RIC1Q4ADV7 1423 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 PROCP04070 461 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 DLG1Q12959 904 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 RAET1GQ6H3X3 334 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 FBXO25Q8TCJ0 367 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 PTCD2Q8WV60 388 aaKnown RBP12.57□□□□□ -0.4
VPS13A-204ENST00000376634 A0A1W2PQ72 361 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 RIPK1Q13546 671 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 BTG3Q14201 252 aaPredicted RBP12.57□□□□□ -0.4
VPS13A-204ENST00000376634 MPPE1Q53F39 396 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 FBXO30Q8TB52 745 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 CXorf40BQ96DE9 158 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 TRMT13Q9NUP7 481 aaKnown RBP12.57□□□□□ -0.4
VPS13A-204ENST00000376634 GSAPA4D1B5 854 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 PRKAG1P54619 331 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 TRIM28Q13263 835 aaKnown RBP12.57□□□□□ -0.4
VPS13A-204ENST00000376634 PNMA5Q96PV4 448 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 CBFA2T3O75081 653 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 BMP7P18075 431 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 MTTPP55157 894 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 SAPCD2Q86UD0 394 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 SEMA4BQ9NPR2 832 aaPredicted RBP12.57□□□□□ -0.4
VPS13A-204ENST00000376634 PTGFRNQ9P2B2 879 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 MGAT4AQ9UM21 535 aa12.57□□□□□ -0.4
VPS13A-204ENST00000376634 CHADO15335 359 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 CATP04040 527 aaKnown RBP12.56□□□□□ -0.4
VPS13A-204ENST00000376634 PAEPP09466 180 aa12.56□□□□□ -0.4
VPS13A-204ENST00000376634 USP41Q3LFD5 358 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms