RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 SLC17A7Q9P2U7 560 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 PRKAG3Q9UGI9 489 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 SEPT3Q9UH03 358 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 HCFC2Q9Y5Z7 792 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 CCNFP41002 786 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 CSKP41240 450 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 ARCN1P48444 511 aaKnown RBP13.94□□□□□ -0.18
PTPRF-202ENST00000372405 SERPINB9P50453 376 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 GPM6BQ13491 265 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 PRSS36Q5K4E3 855 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 RNF43Q68DV7 783 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 RBM23Q86U06 439 aaKnown RBP13.94□□□□□ -0.18
PTPRF-202ENST00000372405 LRRC34Q8IZ02 419 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 SH3RF2Q8TEC5 729 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 DYDC1Q8WWB3 177 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 ALKBH8Q96BT7 664 aaKnown RBP13.94□□□□□ -0.18
PTPRF-202ENST00000372405 ZNF707Q96C28 371 aaPredicted RBP13.94□□□□□ -0.18
PTPRF-202ENST00000372405 MTBPQ96DY7 904 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 APOPT1Q96IL0 206 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 CERS4Q9HA82 394 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 C20orf96Q9NUD7 363 aaPredicted RBP13.94□□□□□ -0.18
PTPRF-202ENST00000372405 PRAMEF12O95522 483 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 ALDOAP04075 364 aaKnown RBP13.94□□□□□ -0.18
PTPRF-202ENST00000372405 SERPINH1P50454 418 aaKnown RBP13.94□□□□□ -0.18
PTPRF-202ENST00000372405 RFTN1Q14699 578 aaPredicted RBP13.94□□□□□ -0.18
PTPRF-202ENST00000372405 LGSNQ5TDP6 509 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 TIFABQ6ZNK6 161 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 TPGS1Q6ZTW0 290 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 TAX1BP1Q86VP1 789 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 RNF135Q8IUD6 432 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 PPHLN1Q8NEY8 458 aaKnown RBP13.94□□□□□ -0.18
PTPRF-202ENST00000372405 DDI1Q8WTU0 396 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 PTCD2Q8WV60 388 aaKnown RBP13.94□□□□□ -0.18
PTPRF-202ENST00000372405 USP13Q92995 863 aaPredicted RBP13.94□□□□□ -0.18
PTPRF-202ENST00000372405 ZSWIM3Q96MP5 696 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 TRIB3Q96RU7 358 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 CINPQ9BW66 212 aaPredicted RBP13.94□□□□□ -0.18
PTPRF-202ENST00000372405 TASP1Q9H6P5 420 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 MRM3Q9HC36 420 aaKnown RBP13.94□□□□□ -0.18
PTPRF-202ENST00000372405 ZNF510Q9Y2H8 683 aa13.94□□□□□ -0.18
PTPRF-202ENST00000372405 C5orf42Q9H799 3197 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 ZWINTO95229 277 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 ITGA2BP08514 1039 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 HNRNPA1P09651 372 aaKnown RBP eCLIP13.93□□□□□ -0.18
PTPRF-202ENST00000372405 ADRA1DP25100 572 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 CNTFP26441 200 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 GP5P40197 560 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 ETV4P43268 484 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 CCT5P48643 541 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 CDH18Q13634 790 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 CNGA3Q16281 694 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 LVRNQ6Q4G3 990 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 GRASPQ7Z6J2 395 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-202ENST00000372405 MFN1Q8IWA4 741 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 APCDD1Q8J025 514 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 FEM1CQ96JP0 617 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 CPNE1Q99829 537 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 PAIP2Q9BPZ3 127 aaKnown RBP13.93□□□□□ -0.18
PTPRF-202ENST00000372405 IARS2Q9NSE4 1012 aaKnown RBP13.93□□□□□ -0.18
PTPRF-202ENST00000372405 VPS51Q9UID3 782 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 VPS28Q9UK41 221 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 C2orf16Q68DN1 1984 aa13.93□□□□□ -0.18
PTPRF-202ENST00000372405 TYW5A2RUC4 315 aaKnown RBP13.92□□□□□ -0.18
PTPRF-202ENST00000372405 TCP11X1B4DZS4 312 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 TMCC1O94876 653 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 FGF19O95750 216 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 TOP3BO95985 862 aaKnown RBP13.92□□□□□ -0.18
PTPRF-202ENST00000372405 MT-CO1P00395 513 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 PRKCGP05129 697 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 SERPINF2P08697 491 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 TAC1P20366 129 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 GBP2P32456 591 aaPredicted RBP13.92□□□□□ -0.18
PTPRF-202ENST00000372405 AVPR1AP37288 418 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 ABCG1P45844 678 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 SCNN1BP51168 640 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 CDK18Q07002 472 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 SEPT6Q14141 434 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 MPP7Q5T2T1 576 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 FYB2Q5VWT5 728 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 STRA8Q7Z7C7 330 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 SPOCK2Q92563 424 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 MAGEB18Q96M61 343 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 RANBP9Q96S59 729 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 RBBP8Q99708 897 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 PRKD2Q9BZL6 878 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 PRRC2BQ5JSZ5 2229 aaKnown RBP13.92□□□□□ -0.18
PTPRF-202ENST00000372405 CCDC195A0A1B0GUA6 201 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 E2F8A0AVK6 867 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 TM9SF1O15321 606 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 VAPBO95292 243 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 EPOP01588 193 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 DDX6P26196 483 aaKnown RBP eCLIP13.92□□□□□ -0.184e-6■■■■□ 24.4
PTPRF-202ENST00000372405 IL9RQ01113 521 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 GALNT3Q14435 633 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 MPPE1Q53F39 396 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 PDPK2PQ6A1A2 396 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 CNTN4Q8IWV2 1026 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 BBS5Q8N3I7 341 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 DCAF4L2Q8NA75 395 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 ACVR1CQ8NER5 493 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms