RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 RNF225M0QZC1 329 aaPredicted RBP8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 PDXKO00764 312 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 FPGTO14772 594 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 CNTN5O94779 1100 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 SETSIPP0DME0 302 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 PRKAR1AP10644 381 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 FGF3P11487 239 aaPredicted RBP8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 PDIA4P13667 645 aaKnown RBP8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 CD19P15391 556 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 OAS2P29728 719 aaKnown RBP8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 GKP32189 559 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 NOS2P35228 1153 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 SMCPP49901 116 aaPredicted RBP8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 SLC8A3P57103 927 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 AMPD3Q01432 767 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 NNTQ13423 1086 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 NR6A1Q15406 480 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 TAF5Q15542 800 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 C4orf48Q5BLP8 95 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 ATP1A1-AS1Q5TC04 95 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 KIAA1161Q6NSJ0 714 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 ESRP1Q6NXG1 681 aaKnown RBP8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 LCLAT1Q6UWP7 414 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 PARS2Q7L3T8 475 aaKnown RBP8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 CCDC117Q8IWD4 279 aaPredicted RBP8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 SRRM1Q8IYB3 904 aaKnown RBP8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 ARMC2Q8NEN0 867 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 GPR156Q8NFN8 814 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 SPATA20Q8TB22 786 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 FAM174AQ8TBP5 190 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 SSC4DQ8WTU2 575 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 GLMNQ92990 594 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 TSACCQ96A04 125 aaPredicted RBP8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 BTN2A3PQ96KV6 586 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 TMEM74Q96NL1 305 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 SERPINB11Q96P15 392 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 LRRC27Q9C0I9 530 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 CUEDC2Q9H467 287 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 TMEM8AQ9HCN3 771 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 VPS51Q9UID3 782 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 SLC25A13Q9UJS0 675 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 TP53TG5Q9Y2B4 290 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 ACTL7AQ9Y615 435 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 ZFHX3Q15911 3703 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 F8P00451 2351 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 MTORP42345 2549 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 RP1L1Q8IWN7 2480 aaPredicted RBP8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 A0A0D9SEW6 157 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 TCAF2A6NFQ2 919 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 WIPF3A6NGB9 483 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 F5H5T6 163 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 TMX2-CTNND1H3BSU7 103 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 I6L893 689 aaPredicted RBP8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 MAPK13O15264 365 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 POLR2DO15514 142 aaKnown RBP8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 B4GAT1O43505 415 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 PDGFAP04085 211 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 ITIH2P19823 946 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 BRD2P25440 801 aaKnown RBP8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 UGT1A3P35503 534 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 RPL34P49207 117 aaKnown RBP8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 NASPP49321 788 aaPredicted RBP8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 NEK3P51956 506 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 CUL2Q13617 745 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 ARHGAP44Q17R89 818 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 ALG11Q2TAA5 492 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 CBWD6Q4V339 395 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 LACTB2Q53H82 288 aaPredicted RBP8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 EFHC2Q5JST6 749 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 LRRC73Q5JTD7 316 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 CBWD3Q5JTY5 395 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 CBWD5Q5RIA9 395 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 PHF19Q5T6S3 580 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 FAXCQ5TGI0 409 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 SPRED1Q7Z699 444 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 BPHLQ86WA6 291 aaPredicted RBP8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 FAM186BQ8IYM0 893 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 IQUBQ8NA54 791 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 ATP11CQ8NB49 1132 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 LINC00301Q8NCQ3 95 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 RCBTB1Q8NDN9 531 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 BTN2A2Q8WVV5 523 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 FEM1CQ96JP0 617 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 TBATAQ96M53 351 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 SLC13A1Q9BZW2 595 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 ZSCAN16Q9H4T2 348 aaPredicted RBP8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 RDH14Q9HBH5 336 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 ANLNQ9NQW6 1124 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 RAB20Q9NX57 234 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 HESX1Q9UBX0 185 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 IL36AQ9UHA7 158 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 VPS28Q9UK41 221 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 GPR34Q9UPC5 381 aa8.63□□□□□ -1.03
HMGB1P39-201ENST00000366304 STMND1H3BQB6 276 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 AP1G1O43747 822 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 TRUB2O95900 331 aaKnown RBP8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 PRNPP04156 253 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 VDRP11473 427 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 CD82P27701 267 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 EIF4A3P38919 411 aaKnown RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms