RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 YBX1P67809 324 aaKnown RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 IFITM3Q01628 133 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 BAATQ14032 418 aaPredicted RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 GRM3Q14832 879 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 DPYSL2Q16555 572 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 Q3C1V9 767 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 AGKQ53H12 422 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 CYBRD1Q53TN4 286 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 ZNF667Q5HYK9 610 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 TBCELQ5QJ74 424 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 PERM1Q5SV97 790 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 CNSTQ6PJW8 725 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 ZPBP2Q6X784 338 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 CDR2LQ86X02 465 aaPredicted RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 TMEM192Q8IY95 271 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 CMTR2Q8IYT2 770 aaKnown RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 CENPLQ8N0S6 344 aaPredicted RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 SPPL2BQ8TCT7 592 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SEPT8Q92599 483 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 MFSD3Q96ES6 412 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 LRCH3Q96II8 777 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 HEXIM2Q96MH2 286 aaKnown RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 PSD2Q9BQI7 771 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 HGH1Q9BTY7 390 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 C1orf50Q9BV19 199 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 UNKQ9C0B0 810 aaKnown RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 OSBPL2Q9H1P3 480 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SIAEQ9HAT2 523 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 FANCEQ9HB96 536 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 MRPL40Q9NQ50 206 aaKnown RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 GGA3Q9NZ52 723 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SLC39A10Q9ULF5 831 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 AURKCQ9UQB9 309 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 NOX1Q9Y5S8 564 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 USP3Q9Y6I4 520 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 GOLGB1Q14789 3259 aaKnown RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 A8MU76 341 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 ZNF487B1APH4 448 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 KPNA4O00629 521 aaPredicted RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 EI24O14681 340 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 MRASO14807 208 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 NDUFB5O43674 189 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SEC14L2O76054 403 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SUPT20HL2P0C7V6 817 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SLC35E2BP0CK96 405 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 GOT1P17174 413 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SAT1P21673 171 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 CCND2P30279 289 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SDC4P31431 198 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 HPCAL1P37235 193 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 AVPR1AP37288 418 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 NR2C2P49116 596 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 HLCSP50747 726 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 CCT8P50990 548 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 TMBIM6P55061 237 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 C1QTNF8P60827 252 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 STX5Q13190 355 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 AQP6Q13520 282 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SEPT6Q14141 434 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 FASTKQ14296 549 aaKnown RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 PLCL1Q15111 1095 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 HSDL1Q3SXM5 330 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SUPT20HL1Q3ZLR7 823 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SAMD4BQ5PRF9 694 aaKnown RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 XAF1Q6GPH4 301 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 ABRAXAS1Q6UWZ7 409 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 GADL1Q6ZQY3 521 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 PIWIL3Q7Z3Z3 882 aaKnown RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 SPRED1Q7Z699 444 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 TMEM135Q86UB9 458 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 RETREG3Q86VR2 466 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 TP53INP2Q8IXH6 220 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 COLGALT2Q8IYK4 626 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 PYROXD2Q8N2H3 581 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 FSTL5Q8N475 847 aaPredicted RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 SPATA6LQ8N4H0 392 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 CCDC185Q8N715 623 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 CCNYL1Q8N7R7 359 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 C1orf127Q8N9H9 656 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 ANKRD52Q8NB46 1076 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS39-202ENST00000348544 BPIFB6Q8NFQ5 453 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 ABHD11Q8NFV4 315 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 CXorf38Q8TB03 319 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 RDH11Q8TC12 318 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SGCDQ92629 289 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 HPS1Q92902 700 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 P2RY11Q96G91 374 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 CNDP2Q96KP4 475 aaKnown RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 GLT1D1Q96MS3 346 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 CGREF1Q99674 301 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 OMDQ99983 421 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SEZ6LQ9BYH1 1024 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 FAM49BQ9NUQ9 324 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 IFT80Q9P2H3 777 aaPredicted RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 CROTQ9UKG9 612 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 POU2F3Q9UKI9 436 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 TSPAN16Q9UKR8 245 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 MAGED2Q9UNF1 606 aaPredicted RBP6.86□□□□□ -1.31
VPS39-202ENST00000348544 FIS1Q9Y3D6 152 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms