RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 TAC1P20366 129 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 TACR2P21452 398 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 PAX7P23759 505 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 ELF1P32519 619 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 ATP5C1P36542 298 aaKnown RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 NDST2P52849 883 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 SLC18A1P54219 525 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 RING1Q06587 406 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 NIPAL4Q0D2K0 466 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 PRPSAP1Q14558 356 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 RFWD3Q6PCD5 774 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 LVRNQ6Q4G3 990 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 CMTR2Q8IYT2 770 aaKnown RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 CFAP52Q8N1V2 620 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 KLHL5Q96PQ7 755 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 YME1L1Q96TA2 773 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 LRRC40Q9H9A6 602 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 SSU72Q9NP77 194 aaKnown RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 SAMD15Q9P1V8 674 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 ZFATQ9P243 1243 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 SLC17A7Q9P2U7 560 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 HBS1LQ9Y450 684 aaKnown RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 MMP20O60882 483 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 URODP06132 367 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 F7P08709 466 aaPredicted RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 SNRPAP09012 282 aaKnown RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 SPATA31D3P0C874 917 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 HSPA8P11142 646 aaKnown RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 LAG3P18627 525 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 ADRA1DP25100 572 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 SLC6A4P31645 630 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 DNAJA1P31689 397 aaKnown RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 ACVRL1P37023 503 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 MAGEA8P43361 318 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 MNAT1P51948 309 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 IL9RQ01113 521 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 SLC18A2Q05940 514 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 TWF1Q12792 350 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 FAM133BQ5BKY9 247 aaKnown RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 HECTD3Q5T447 861 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 MROH9Q5TGP6 573 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 GKAP1Q5VSY0 366 aaPredicted RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 SNX30Q5VWJ9 437 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 TPGS2Q68CL5 300 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 TIGD7Q6NT04 549 aaPredicted RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 SPATA31D4Q6ZUB0 917 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 CYS1Q717R9 158 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 NECAB2Q7Z6G3 386 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 PIGWQ7Z7B1 504 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 DDX53Q86TM3 631 aaKnown RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 KLHDC8BQ8IXV7 354 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 LGI2Q8N0V4 545 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 IPMKQ8NFU5 416 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 WBP2Q969T9 261 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 TTC17Q96AE7 1141 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 ZNF669Q96BR6 464 aaPredicted RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 FCRL5Q96RD9 977 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 ELAC2Q9BQ52 826 aaKnown RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 TGIF2Q9GZN2 237 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 NACA2Q9H009 215 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 RNF38Q9H0F5 515 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 GKN1Q9NS71 199 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 SPATS2LQ9NUQ6 558 aaKnown RBP9.37□□□□□ -0.91
ATG4A-202ENST00000345734 BFARQ9NZS9 450 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 FNIP2Q9P278 1114 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 PSAT1Q9Y617 370 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 MYO7AQ13402 2215 aa9.37□□□□□ -0.91
ATG4A-202ENST00000345734 OBSL1O75147 1896 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 CCDC78A2IDD5 438 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 WDR91A4D1P6 747 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 C2orf78A6NCI8 922 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 PRRG1O14668 218 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 LPXNO60711 386 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 PMPCBO75439 489 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 RFPL1O75677 317 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 KRT37O76014 449 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 ZWINTO95229 277 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 POLBP06746 335 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 ALDH1A3P47895 512 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 NEK3P51956 506 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 KPNA1P52294 538 aaPredicted RBP9.36□□□□□ -0.91
ATG4A-202ENST00000345734 SLC10A7Q0GE19 358 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 IFT88Q13099 833 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 RAB33AQ14088 237 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 RBBP5Q15291 538 aaKnown RBP9.36□□□□□ -0.91
ATG4A-202ENST00000345734 SPANXN3Q5MJ09 141 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 HHATQ5VTY9 493 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 PEAR1Q5VY43 1037 aaPredicted RBP9.36□□□□□ -0.91
ATG4A-202ENST00000345734 MARK2Q7KZI7 788 aaKnown RBP9.36□□□□□ -0.91
ATG4A-202ENST00000345734 C16orf59Q7L2K0 433 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 KDELC2Q7Z4H8 507 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 RASSF3Q86WH2 238 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 ZNF354CQ86Y25 554 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 CCNJLQ8IV13 435 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 DENND1CQ8IV53 801 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 CACNA2D3Q8IZS8 1091 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 TMEM199Q8N511 208 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 OVCA2Q8WZ82 227 aa9.36□□□□□ -0.91
ATG4A-202ENST00000345734 PSMG2Q969U7 264 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms