RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 GANQ9H2C0 597 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 C1orf112Q9NSG2 853 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 LAMC1P11047 1609 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 PQLC2LA1A4F0 135 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 RRN3P2A6NIE6 340 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 SLC9B1P1A6NJY1 282 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 TMEM127O75204 238 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ACSL3O95573 720 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 RARBP10826 455 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 HK3P52790 923 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 SKA3Q8IX90 412 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 EXOSC4Q9NPD3 245 aaKnown RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ZNF275Q9NSD4 429 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 TADA2AO75478 443 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 PVALBP20472 110 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 RPS3AP61247 264 aaKnown RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 CACUL1Q86Y37 369 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 VPS35Q96QK1 796 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 KCTD15Q96SI1 283 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 DPYSL5Q9BPU6 564 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 MUC3BQ9H195 1237 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 LGR6Q9HBX8 967 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 TCF7L1Q9HCS4 588 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ALG5Q9Y673 324 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 SPTBN1Q01082 2364 aaKnown RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 RBAK-RBAKDNI3L0D1 243 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 GMDSO60547 372 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ZBTB48P10074 688 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 GABPAQ06546 454 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 EHHADHQ08426 723 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 MADCAM1Q13477 382 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 PDK3Q15120 406 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 TIPARPQ7Z3E1 657 aaKnown RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 INO80EQ8NBZ0 244 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 PRMT1Q99873 361 aaKnown RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 MTG1Q9BT17 334 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 VPS54Q9P1Q0 977 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 GNG8Q9UK08 70 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 E5RI56 91 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 FCHO1O14526 889 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 NDUFB5O43674 189 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 SERPIND1P05546 499 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 CKMT1AP12532 417 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 PTBP1P26599 531 aaKnown RBP eCLIP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 PTGR1Q14914 329 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 CRY1Q16526 586 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 HSDL1Q3SXM5 330 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 PLEKHG4Q58EX7 1191 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ADHFE1Q8IWW8 467 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 OR8H3Q8N146 312 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 HYLS1Q96M11 299 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 KLHL21Q9UJP4 597 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 MAPK8IP1Q9UQF2 711 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 M0QZK8 103 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 NAGAP17050 411 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 PDIA3P30101 505 aaKnown RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 CENPAP49450 140 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 PRAMEP78395 509 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 BNIP2Q12982 314 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 FASTKD1Q53R41 847 aaKnown RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 RPL13AP3Q6NVV1 102 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 KBTBD6Q86V97 674 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 LCORLQ8N3X6 602 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 C7orf50Q9BRJ6 194 aaKnown RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 SUGCTQ9HAC7 445 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 PNPLA6Q8IY17 1366 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 CDK12Q9NYV4 1490 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ATP5J2-PTCD1G3V325 749 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 IFNB1P01574 187 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 PLOD1Q02809 727 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ETFRF1Q6IPR1 90 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 LDHAL6AQ6ZMR3 332 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 KCTD1Q719H9 257 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 CYP4Z1Q86W10 505 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ZNF565Q8N9K5 539 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 FAM13CQ8NE31 585 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 RFFLQ8WZ73 363 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 THRSPQ92748 146 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 TMEM203Q969S6 136 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 GFM1Q96RP9 751 aaKnown RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 CLPBQ9H078 707 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 SLCO1B3Q9NPD5 702 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ANGEL1Q9UNK9 670 aaKnown RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 CITO14578 2027 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ANKDD1BA6NHY2 528 aa3.79□□□□□ -1.8
SYNE2-202ENST00000344113 PGK2P07205 417 aa3.79□□□□□ -1.8
SYNE2-202ENST00000344113 EPHB1P54762 984 aa3.79□□□□□ -1.8
SYNE2-202ENST00000344113 HAGHQ16775 308 aa3.79□□□□□ -1.8
SYNE2-202ENST00000344113 NKAPLQ5M9Q1 402 aa3.79□□□□□ -1.8
SYNE2-202ENST00000344113 ZDHHC13Q8IUH4 622 aa3.79□□□□□ -1.8
SYNE2-202ENST00000344113 ARMC8Q8IUR7 673 aa3.79□□□□□ -1.8
SYNE2-202ENST00000344113 ENTHD1Q8IYW4 607 aa3.79□□□□□ -1.8
SYNE2-202ENST00000344113 WDSUB1Q8N9V3 476 aa3.79□□□□□ -1.8
SYNE2-202ENST00000344113 STOML3Q8TAV4 291 aa3.79□□□□□ -1.8
SYNE2-202ENST00000344113 MANSC1Q9H8J5 431 aa3.79□□□□□ -1.8
SYNE2-202ENST00000344113 COPZ2Q9P299 210 aa3.79□□□□□ -1.8
SYNE2-202ENST00000344113 DNAJB9Q9UBS3 223 aa3.79□□□□□ -1.8
SYNE2-202ENST00000344113 PCYOX1Q9UHG3 505 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms