RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ZBTB46Q86UZ6 589 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 NT5DC4Q86YG4 428 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 MFSD6LQ8IWD5 586 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 ZNF786Q8N393 782 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 FTHL17Q9BXU8 183 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 CDHR5Q9HBB8 845 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 HEATR9A2RTY3 570 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 H3BRB1 525 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 AKAP10O43572 662 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 YBX3P16989 372 aaKnown RBP eCLIP22.61■■□□□ 1.213e-20■□□□□ 9.2
TRIM28-202ENST00000341753 ERCC2P18074 760 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 CSE1LP55060 971 aaKnown RBP22.61■■□□□ 1.21
TRIM28-202ENST00000341753 LAMC2Q13753 1193 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 SLC25A52Q3SY17 297 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 NPWQ8N729 165 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 LINC01465Q8N7H1 131 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 ANKRD52Q8NB46 1076 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 TXNDC5Q8NBS9 432 aaKnown RBP22.61■■□□□ 1.21
TRIM28-202ENST00000341753 RNF169Q8NCN4 708 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 MCMBPQ9BTE3 642 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 OSBPL2Q9H1P3 480 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 TUT1Q9H6E5 874 aaKnown RBP22.61■■□□□ 1.21
TRIM28-202ENST00000341753 DUS2Q9NX74 493 aaKnown RBP22.61■■□□□ 1.21
TRIM28-202ENST00000341753 SUCOQ9UBS9 1254 aaKnown RBP22.61■■□□□ 1.21
TRIM28-202ENST00000341753 FAM149AA5PLN7 773 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 BCAT1P54687 386 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 CHSY3Q70JA7 882 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 USP33Q8TEY7 942 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 POMKQ9H5K3 350 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 PIGVQ9NUD9 493 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 SNTG2Q9NY99 539 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 SNX10Q9Y5X0 201 aa22.61■■□□□ 1.21
TRIM28-202ENST00000341753 TARM1B6A8C7 271 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 NRP1O14786 923 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 TPST1O60507 370 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 CYP2B6P20813 491 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 TKTP29401 623 aaKnown RBP22.6■■□□□ 1.21
TRIM28-202ENST00000341753 ADSLP30566 484 aaPredicted RBP22.6■■□□□ 1.21
TRIM28-202ENST00000341753 PLK1P53350 603 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 SLC12A1Q13621 1099 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 FASTKQ14296 549 aaKnown RBP22.6■■□□□ 1.21
TRIM28-202ENST00000341753 ZNF792Q3KQV3 632 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 MARCH8Q5T0T0 291 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 IL31Q6EBC2 164 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 RNF135Q8IUD6 432 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 TTC39CQ8N584 583 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 RDH11Q8TC12 318 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 UNC93B1Q9H1C4 597 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 CLK4Q9HAZ1 481 aaKnown RBP22.6■■□□□ 1.21
TRIM28-202ENST00000341753 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.6■■□□□ 1.21
TRIM28-202ENST00000341753 SLCO1B7G3V0H7 640 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 CLIC3O95833 236 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 LRP8Q14114 963 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 ELMSAN1Q6PJG2 1045 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 HFE2Q6ZVN8 426 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 BBS5Q8N3I7 341 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 GPRC5AQ8NFJ5 357 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 ISOC1Q96CN7 298 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 MAML3Q96JK9 1138 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 EIF2AQ9BY44 585 aaKnown RBP22.6■■□□□ 1.21
TRIM28-202ENST00000341753 IL1RL2Q9HB29 575 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 GJD2Q9UKL4 321 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 ACOT9Q9Y305 439 aa22.6■■□□□ 1.21
TRIM28-202ENST00000341753 MRPL42Q9Y6G3 142 aaKnown RBP22.6■■□□□ 1.21
TRIM28-202ENST00000341753 CLDN5O00501 218 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 DCLK1O15075 740 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 SNAI1O95863 264 aaPredicted RBP22.59■■□□□ 1.21
TRIM28-202ENST00000341753 PSMD7P51665 324 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 CLCN2P51788 898 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 C1QTNF8P60827 252 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 GRIK4Q16099 956 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 C6orf10Q5SRN2 563 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 GPR141Q7Z602 305 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 PNPLA1Q8N8W4 532 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 CANT1Q8WVQ1 401 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 RHOJQ9H4E5 214 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 PDHXO00330 501 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 TRIM24O15164 1050 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 GRIA3P42263 894 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 MAGEA10P43363 369 aaPredicted RBP22.59■■□□□ 1.21
TRIM28-202ENST00000341753 GJA9P57773 515 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 POU5F1BQ06416 359 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 PAFAH1B3Q15102 231 aaKnown RBP22.59■■□□□ 1.21
TRIM28-202ENST00000341753 KCTD11Q693B1 232 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 ANKRD23Q86SG2 305 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 PIGZQ86VD9 579 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 C12orf43Q96C57 262 aaKnown RBP22.59■■□□□ 1.21
TRIM28-202ENST00000341753 SLC10A4Q96EP9 437 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 OSBPL6Q9BZF3 934 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 CLEC11AQ9Y240 323 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 ANKRD6Q9Y2G4 727 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 ATP6AP2A0A1C7CYW4 349 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 I6L893 689 aaPredicted RBP22.59■■□□□ 1.21
TRIM28-202ENST00000341753 ATP6AP2O75787 350 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 TSPAN8P19075 237 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 SLC5A3P53794 718 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 NME5P56597 212 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 NAA20P61599 178 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 PRKCQQ04759 706 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 FAM187BQ17R55 369 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms