RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ITGA2BP08514 1039 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 CCNFP41002 786 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 CSKP41240 450 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 RGRP47804 291 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 NEK3P51956 506 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 ZKSCAN8Q15776 578 aaPredicted RBP13.54□□□□□ -0.24
HMGB1-202ENST00000339872 ARHGAP15Q53QZ3 475 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 ESRP1Q6NXG1 681 aaKnown RBP13.54□□□□□ -0.24
HMGB1-202ENST00000339872 RTL10Q7L3V2 364 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 RNF135Q8IUD6 432 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 SH3RF2Q8TEC5 729 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 ATXN7L3BQ96GX2 97 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 FEM1AQ9BSK4 669 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 SLC13A1Q9BZW2 595 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 PLK2Q9NYY3 685 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 SLC2A6Q9UGQ3 507 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 ARHGAP26Q9UNA1 814 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 CCL26Q9Y258 94 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 NOTCH4Q99466 2003 aa13.54□□□□□ -0.24
HMGB1-202ENST00000339872 HEATR9A2RTY3 570 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 ATXN1LP0C7T5 689 aaKnown RBP13.53□□□□□ -0.24
HMGB1-202ENST00000339872 HOXA9P31269 272 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 FOXN2P32314 431 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 SCNN1BP51168 640 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 PDE1BQ01064 536 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 CDK18Q07002 472 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 GPM6BQ13491 265 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 SLC5A9Q2M3M2 681 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 GRTP1Q5TC63 336 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 RBM23Q86U06 439 aaKnown RBP13.53□□□□□ -0.24
HMGB1-202ENST00000339872 CMTM8Q8IZV2 173 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 CPXM2Q8N436 756 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 FEM1CQ96JP0 617 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 FAM111AQ96PZ2 611 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 SRPK1Q96SB4 655 aaKnown RBP13.53□□□□□ -0.24
HMGB1-202ENST00000339872 RBBP8Q99708 897 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 PRKD2Q9BZL6 878 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 NSRP1Q9H0G5 558 aaKnown RBP13.53□□□□□ -0.24
HMGB1-202ENST00000339872 NOD2Q9HC29 1040 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 PRKAG3Q9UGI9 489 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 ANKRD36A6QL64 1941 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 ATG2AQ2TAZ0 1938 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 LOC285095A0A1B0GVY8 99 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 TPP1O14773 563 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 XYLBO75191 536 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 MOSPD3O75425 235 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 VAPBO95292 243 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 PAMP19021 973 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 DDX6P26196 483 aaKnown RBP eCLIP13.53□□□□□ -0.24
HMGB1-202ENST00000339872 NTHL1P78549 312 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 GALNT3Q14435 633 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 CYTH1Q15438 398 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 SHHQ15465 462 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 CNGA3Q16281 694 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 MPPE1Q53F39 396 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 TIFABQ6ZNK6 161 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 NDUFAF2Q8N183 169 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 CERS4Q9HA82 394 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 TREX1Q9NSU2 369 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 FGFR1OP2Q9NVK5 253 aa13.53□□□□□ -0.24
HMGB1-202ENST00000339872 EBAG9O00559 213 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 INSIG1O15503 277 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 TMCC1O94876 653 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 ALDOAP04075 364 aaKnown RBP13.52□□□□□ -0.24
HMGB1-202ENST00000339872 HNRNPA1P09651 372 aaKnown RBP eCLIP13.52□□□□□ -0.24
HMGB1-202ENST00000339872 HLA-DPA1P20036 260 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 SPRP35270 261 aaPredicted RBP13.52□□□□□ -0.24
HMGB1-202ENST00000339872 ABCG1P45844 678 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 LIMK2P53671 638 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 DNAJC3Q13217 504 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 PDK4Q16654 411 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 GKAP1Q5VSY0 366 aaPredicted RBP13.52□□□□□ -0.24
HMGB1-202ENST00000339872 CDHR3Q6ZTQ4 885 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 ATP2A3Q93084 1043 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 RANBP9Q96S59 729 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 TASP1Q9H6P5 420 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 SCUBE2Q9NQ36 999 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 VPS51Q9UID3 782 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 OR51B4Q9Y5P0 310 aa13.52□□□□□ -0.24
HMGB1-202ENST00000339872 WDR91A4D1P6 747 aa13.52□□□□□ -0.25
HMGB1-202ENST00000339872 ZMPSTE24O75844 475 aa13.52□□□□□ -0.25
HMGB1-202ENST00000339872 CD160O95971 181 aa13.52□□□□□ -0.25
HMGB1-202ENST00000339872 FGF1P05230 155 aa13.52□□□□□ -0.25
HMGB1-202ENST00000339872 TAC1P20366 129 aa13.52□□□□□ -0.25
HMGB1-202ENST00000339872 ARNTP27540 789 aa13.52□□□□□ -0.25
HMGB1-202ENST00000339872 HNRNPH2P55795 449 aaKnown RBP13.52□□□□□ -0.25
HMGB1-202ENST00000339872 SF3A3Q12874 501 aaKnown RBP eCLIP13.52□□□□□ -0.25
HMGB1-202ENST00000339872 KIAA0930Q6ICG6 404 aaPredicted RBP13.52□□□□□ -0.25
HMGB1-202ENST00000339872 GRASPQ7Z6J2 395 aaPredicted RBP13.52□□□□□ -0.25
HMGB1-202ENST00000339872 DCAF4L2Q8NA75 395 aa13.52□□□□□ -0.25
HMGB1-202ENST00000339872 SAMD11Q96NU1 681 aa13.52□□□□□ -0.25
HMGB1-202ENST00000339872 MKS1Q9NXB0 559 aa13.52□□□□□ -0.25
HMGB1-202ENST00000339872 NSMCE4AQ9NXX6 385 aa13.52□□□□□ -0.25
HMGB1-202ENST00000339872 HCFC2Q9Y5Z7 792 aa13.52□□□□□ -0.25
HMGB1-202ENST00000339872 E2F8A0AVK6 867 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 PRKCGP05129 697 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 ALADP13716 330 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 CR2P20023 1033 aa13.51□□□□□ -0.25
HMGB1-202ENST00000339872 MAGEA10P43363 369 aaPredicted RBP13.51□□□□□ -0.25
HMGB1-202ENST00000339872 ARCN1P48444 511 aaKnown RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms