RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 TNNT2P45379 298 aaPredicted RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 QARSP47897 775 aaKnown RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 ASCL1P50553 236 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 IRAK1P51617 712 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 RPS21P63220 83 aaKnown RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 UBE2IP63279 158 aaKnown RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 MPP1Q00013 466 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 LTBQ06643 244 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 ODF1Q14990 250 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 PLEKHN1Q494U1 663 aaPredicted RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 GLYR1Q49A26 553 aaPredicted RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 ZDHHC20Q5W0Z9 365 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 AP1ARQ63HQ0 302 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 REP15Q6BDI9 236 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 EFCAB12Q6NXP0 572 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 PPP1R2P3Q6NXS1 205 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 B3GNT6Q6ZMB0 384 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 C1QL2Q7Z5L3 287 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 SETD3Q86TU7 594 aaPredicted RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 METTL23Q86XA0 190 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 HID1Q8IV36 788 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CCDC60Q8IWA6 550 aaPredicted RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 D2HGDHQ8N465 521 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 UBR7Q8N806 425 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 OR10H5Q8NGA6 315 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 MDM1Q8TC05 714 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CACTINQ8WUQ7 758 aaKnown RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 NLRP7Q8WX94 980 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 PPM1EQ8WY54 764 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 FAM149B1Q96BN6 582 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 PPP1R16AQ96I34 528 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CCDC114Q96M63 670 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CMKLR1Q99788 373 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 MTG2Q9H4K7 406 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 DENND2DQ9H6A0 471 aaPredicted RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CALHM2Q9HA72 323 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 FRMD4AQ9P2Q2 1039 aaPredicted RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 HMGXB4Q9UGU5 601 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 ERRFI1Q9UJM3 462 aaPredicted RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 PCDHA6Q9UN73 950 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 SLC17A4Q9Y2C5 497 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 PADI2Q9Y2J8 665 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 OR10H1Q9Y4A9 318 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CROCCQ5TZA2 2017 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 TCRBV21S2A2A0A5A6 115 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 SLC5A10A0PJK1 596 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 CD8B2A6NJW9 211 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 KCNJ18B7U540 433 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 C1QTNF3-AMACRE9PGA6 284 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 J3QL48 77 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 SGK1O00141 431 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 PDE2AO00408 941 aaPredicted RBP1.59□□□□□ -2.15
LINC00643-201ENST00000334389 PRRG2O14669 202 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 ARPC1BO15143 372 aaKnown RBP1.59□□□□□ -2.15
LINC00643-201ENST00000334389 SART1O43290 800 aaKnown RBP1.59□□□□□ -2.15
LINC00643-201ENST00000334389 TADA2AO75478 443 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 FBXO21O94952 628 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 RPN1P04843 607 aaKnown RBP1.59□□□□□ -2.15
LINC00643-201ENST00000334389 ALPPP05187 535 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 CAPN1P07384 714 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 TYRP14679 529 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 JUPP14923 745 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 DGKAP23743 735 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 ELF1P32519 619 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 SOX18P35713 384 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 IGFALSP35858 605 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 KIR3DL1P43629 444 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 TKTL1P51854 596 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 ADPRHP54922 357 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 GP2P55259 537 aaKnown RBP1.59□□□□□ -2.15
LINC00643-201ENST00000334389 ADAM8P78325 824 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 TFAP4Q01664 338 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 PRKCEQ02156 737 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 TWF1Q12792 350 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 AIMP1Q12904 312 aaKnown RBP1.59□□□□□ -2.15
LINC00643-201ENST00000334389 WDR43Q15061 677 aaKnown RBP eCLIP1.59□□□□□ -2.15
LINC00643-201ENST00000334389 POSTNQ15063 836 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 GUSBP1Q15486 140 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 TMEM95Q3KNT9 176 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 RNFT1Q5M7Z0 435 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 DCAF12Q5T6F0 453 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 ZKSCAN2Q63HK3 967 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 CEP135Q66GS9 1140 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 DESI1Q6ICB0 168 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 C19orf48Q6RUI8 117 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 ERN2Q76MJ5 926 aaKnown RBP1.59□□□□□ -2.15
LINC00643-201ENST00000334389 HORMAD1Q86X24 394 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 GRAMD2AQ8IUY3 354 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 DSELQ8IZU8 1212 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 CNPY4Q8N129 248 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 MEIOBQ8N635 442 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 LZTR1Q8N653 840 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 SLC15A4Q8N697 577 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 PCDH20Q8N6Y1 951 aaKnown RBP1.59□□□□□ -2.15
LINC00643-201ENST00000334389 RDH13Q8NBN7 331 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 TP53I13Q8NBR0 393 aaPredicted RBP1.59□□□□□ -2.15
LINC00643-201ENST00000334389 AGBL5Q8NDL9 886 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 MDS2Q8NDY4 140 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 ZPLD1Q8TCW7 415 aa1.59□□□□□ -2.15
LINC00643-201ENST00000334389 RHPN1Q8TCX5 695 aa1.59□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms