RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 BMP7P18075 431 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 TLX1P31314 330 aaPredicted RBP14.4□□□□□ -0.1
COL7A1-201ENST00000328333 RPA3P35244 121 aaPredicted RBP14.4□□□□□ -0.1
COL7A1-201ENST00000328333 CBX3Q13185 183 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 EIF2S3LQ2VIR3 472 aaKnown RBP14.4□□□□□ -0.1
COL7A1-201ENST00000328333 TMEM143Q96AN5 459 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 VPS35Q96QK1 796 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 RAP2CQ9Y3L5 183 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 IFNA6P05013 189 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 CSH1P0DML2 217 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 CSH2P0DML3 217 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 OAFQ86UD1 273 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 PHC3Q8NDX5 983 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 MXRA8Q9BRK3 442 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 ZNF214Q9UL59 606 aaPredicted RBP14.4□□□□□ -0.1
COL7A1-201ENST00000328333 BARX2Q9UMQ3 279 aaPredicted RBP14.4□□□□□ -0.1
COL7A1-201ENST00000328333 OR6A2O95222 327 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 TXNP10599 105 aaKnown RBP14.4□□□□□ -0.1
COL7A1-201ENST00000328333 SLC6A2P23975 617 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 CCR3P51677 355 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 HUNKP57058 714 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 PCBP1Q15365 356 aaKnown RBP eCLIP14.4□□□□□ -0.1
COL7A1-201ENST00000328333 GPR107Q5VW38 600 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 SULT1C3Q6IMI6 304 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 PLCZ1Q86YW0 608 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 TTC29Q8NA56 475 aaPredicted RBP14.4□□□□□ -0.1
COL7A1-201ENST00000328333 POMKQ9H5K3 350 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 NYAP2Q9P242 653 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 CLTCQ00610 1675 aaKnown RBP14.4□□□□□ -0.1
COL7A1-201ENST00000328333 KBTBD13C9JR72 458 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 TSPAN4O14817 238 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 ADAMDEC1O15204 470 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 ZNF268Q14587 947 aaPredicted RBP14.4□□□□□ -0.1
COL7A1-201ENST00000328333 ZBTB6Q15916 424 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 CCDC115Q96NT0 180 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 MMP14P50281 582 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 CCDC107Q8WV48 283 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 GIT1Q9Y2X7 761 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 GPD2P43304 727 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 MTAPQ13126 283 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 POU6F1Q14863 301 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 SUZ12Q15022 739 aaKnown RBP14.4□□□□□ -0.1
COL7A1-201ENST00000328333 COLGALT1Q8NBJ5 622 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 CHST13Q8NET6 341 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 TAMM41Q96BW9 452 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 WDR27A2RRH5 827 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 FAM86C2PA6NEL3 165 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 LRRC14BA6NHZ5 514 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 VAPBO95292 243 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 LTA4HP09960 611 aaKnown RBP14.4□□□□□ -0.1
COL7A1-201ENST00000328333 DLG1Q12959 904 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 KAT5Q92993 513 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 LENG9Q96B70 501 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 REXO5Q96IC2 774 aaKnown RBP14.4□□□□□ -0.1
COL7A1-201ENST00000328333 PTGFRNQ9P2B2 879 aa14.4□□□□□ -0.1
COL7A1-201ENST00000328333 ALKQ9UM73 1620 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 ENTPD5O75356 428 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 ADRA1DP25100 572 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 TMEM44Q2T9K0 475 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 RNF19BQ6ZMZ0 732 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 QSOX2Q6ZRP7 698 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 SLC47A2Q86VL8 602 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 CCDC24Q8N4L8 307 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 SLC47A1Q96FL8 570 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 LACRTQ9GZZ8 138 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 ACSS3Q9H6R3 686 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 SCAF8Q9UPN6 1271 aaKnown RBP14.39□□□□□ -0.11
COL7A1-201ENST00000328333 GNEQ9Y223 722 aaKnown RBP14.39□□□□□ -0.11
COL7A1-201ENST00000328333 TFECO14948 347 aaPredicted RBP14.39□□□□□ -0.11
COL7A1-201ENST00000328333 CST1P01037 141 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 SP100P23497 879 aaPredicted RBP14.39□□□□□ -0.11
COL7A1-201ENST00000328333 MCOLN2Q8IZK6 566 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 CRISPLD1Q9H336 500 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 DNAJB4Q9UDY4 337 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 TRIM17Q9Y577 477 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 NWD1Q149M9 1564 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 RAD17O75943 681 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 SLC25A27O95847 323 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 ATP5F1P24539 256 aaPredicted RBP14.39□□□□□ -0.11
COL7A1-201ENST00000328333 TIE1P35590 1138 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 OR6J1Q8NGC5 347 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 DUSP10Q9Y6W6 482 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 POLRMTO00411 1230 aaKnown RBP14.39□□□□□ -0.11
COL7A1-201ENST00000328333 TPP1O14773 563 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 SLC30A4O14863 429 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 CCNT2O60583 730 aaKnown RBP14.39□□□□□ -0.11
COL7A1-201ENST00000328333 IST1P53990 364 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 HLA-DQA1Q5Y7H0 255 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 ADGRF2Q8IZF7 708 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 KCNH7Q9NS40 1196 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 FAM25EA8MYX2 175 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 BCKDKO14874 412 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 CYP2A6P11509 494 aaPredicted RBP14.39□□□□□ -0.11
COL7A1-201ENST00000328333 RRM1P23921 792 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 CCNCP24863 283 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 ANXA8L1Q5VT79 327 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 AGMOQ6ZNB7 445 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 MSANTD1Q6ZTZ1 278 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 C2orf69Q8N8R5 385 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 HGH1Q9BTY7 390 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms