RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 TPGS1Q6ZTW0 290 aa16.88■□□□□ 0.29
PHRF1-201ENST00000264555 OTOP3Q7RTS5 596 aa16.88■□□□□ 0.29
PHRF1-201ENST00000264555 ECHDC2Q86YB7 292 aa16.88■□□□□ 0.29
PHRF1-201ENST00000264555 TRPC4APQ8TEL6 797 aa16.88■□□□□ 0.29
PHRF1-201ENST00000264555 MINDY3Q9H8M7 445 aa16.88■□□□□ 0.29
PHRF1-201ENST00000264555 CRYBG1Q9Y4K1 1723 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 SNRPB2P08579 225 aaKnown RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 CHI3L1P36222 383 aaPredicted RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 KCNA10Q16322 511 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 CYP2R1Q6VVX0 501 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 HJURPQ8NCD3 748 aaPredicted RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 GPR152Q8TDT2 470 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 BCO2Q9BYV7 579 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 MAN1C1Q9NR34 630 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 GNPTGQ9UJJ9 305 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 LPOP22079 712 aaPredicted RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 ATP6V0D1P61421 351 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 CREMQ03060 361 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 BNIP1Q12981 228 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 PTPRNQ16849 979 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 METTL3Q86U44 580 aaKnown RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 PCDH20Q8N6Y1 951 aaKnown RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 OR4L1Q8NH43 312 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 KLHL5Q96PQ7 755 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 ASB8Q9H765 288 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 PNPOQ9NVS9 261 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 AGO1Q9UL18 857 aaKnown RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 SLC45A1Q9Y2W3 748 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 CD3EAPO15446 510 aaKnown RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 TBL1XO60907 577 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 ZNF682O95780 498 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 SNRPD1P62314 119 aaKnown RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 PARP15Q460N3 678 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 LENG1Q96BZ8 264 aaPredicted RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 COPG2Q9UBF2 871 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 HBS1LQ9Y450 684 aaKnown RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 NUP98P52948 1817 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 M0R3G1 203 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 DEAF1O75398 565 aaPredicted RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 LRIG2O94898 1065 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 RHOQP17081 205 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 PTDSS1P48651 473 aaKnown RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 NDUFV1P49821 464 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 HPCAP84074 193 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 TAF10Q12962 218 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 SH3PXD2AQ5TCZ1 1133 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 SEPHS2Q99611 448 aa16.87■□□□□ 0.29
PHRF1-201ENST00000264555 EIF2B3Q9NR50 452 aaKnown RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 COL2A1P02458 1487 aaPredicted RBP16.87■□□□□ 0.29
PHRF1-201ENST00000264555 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.86■□□□□ 0.29
PHRF1-201ENST00000264555 E9PAM4 449 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 ZBTB14O43829 449 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 SCNN1AP37088 669 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 CSTF3Q12996 717 aaKnown RBP16.86■□□□□ 0.29
PHRF1-201ENST00000264555 BHLHE22Q8NFJ8 381 aaPredicted RBP16.86■□□□□ 0.29
PHRF1-201ENST00000264555 SERAC1Q96JX3 654 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 SLC4A5Q9BY07 1137 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 CHRAC1Q9NRG0 131 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 TMPRSS4Q9NRS4 437 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 TBC1D23Q9NUY8 699 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 TRAV19A0A0A6YYK7 116 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 MYBPHLA2RUH7 354 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 IFNA14P01570 189 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 IL1R2P27930 398 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 ANXA11P50995 505 aaKnown RBP16.86■□□□□ 0.29
PHRF1-201ENST00000264555 TP53BP2Q13625 1128 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 CRY1Q16526 586 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 SPATA6LQ8N4H0 392 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 FIG4Q92562 907 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 PTPRHQ9HD43 1115 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 ARL15Q9NXU5 204 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 FBXW11Q9UKB1 542 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 LDLRP01130 860 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 EPHA3P29320 983 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 RAD23AP54725 363 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 MRPS22P82650 360 aaKnown RBP16.86■□□□□ 0.29
PHRF1-201ENST00000264555 DLK2Q6UY11 383 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 C11orf96Q7Z7L8 435 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 ATP13A3Q9H7F0 1226 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 AGO3Q9H9G7 860 aaKnown RBP16.86■□□□□ 0.29
PHRF1-201ENST00000264555 DTLQ9NZJ0 730 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 PNMA8BQ9ULN7 279 aaPredicted RBP16.86■□□□□ 0.29
PHRF1-201ENST00000264555 OR4Q2P0C623 313 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 CCT8P50990 548 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 CCL23P55773 120 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 TMEM110Q86TL2 294 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 ZSCAN18Q8TBC5 510 aaPredicted RBP16.86■□□□□ 0.29
PHRF1-201ENST00000264555 DDX1Q92499 740 aaKnown RBP16.86■□□□□ 0.29
PHRF1-201ENST00000264555 WFS1O76024 890 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 VAC14Q08AM6 782 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 GALNT3Q14435 633 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 STARD3Q14849 445 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 CA9Q16790 459 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 FITM2Q8N6M3 262 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 MED8Q96G25 268 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 HIC2Q96JB3 615 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 MARK4Q96L34 752 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 COPS7BQ9H9Q2 264 aaPredicted RBP16.86■□□□□ 0.29
PHRF1-201ENST00000264555 TXNRD2Q9NNW7 524 aa16.86■□□□□ 0.29
PHRF1-201ENST00000264555 ARL8BQ9NVJ2 186 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms