RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 RPF1Q9H9Y2 349 aaKnown RBP14.52□□□□□ -0.08
SDC1-201ENST00000254351 GPRC5DQ9NZD1 345 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 NR5A2O00482 541 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 SNAP29O95721 258 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 SBK3P0C264 359 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 NMBRP28336 390 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 LIMK2P53671 638 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 MPP1Q00013 466 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 TSPY1Q01534 308 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 FPGSQ05932 587 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 TNK2Q07912 1038 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 PRKAA1Q13131 559 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 ANKRD60Q9BZ19 345 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 DRC3Q9H069 523 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 UPF3AQ9H1J1 476 aaKnown RBP14.52□□□□□ -0.08
SDC1-201ENST00000254351 SIAEQ9HAT2 523 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 SPAG4Q9NPE6 437 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 VPS45Q9NRW7 570 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 HESX1Q9UBX0 185 aa14.52□□□□□ -0.08
SDC1-201ENST00000254351 CPSF3Q9UKF6 684 aaKnown RBP14.52□□□□□ -0.08
SDC1-201ENST00000254351 SCN9AQ15858 1988 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 KRBA1A5PL33 1030 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 INPP4BO15327 924 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 CILPO75339 1184 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 EEF1DP29692 281 aaKnown RBP14.52□□□□□ -0.09
SDC1-201ENST00000254351 PLIN5Q00G26 463 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 PPP1R8Q12972 351 aaKnown RBP14.52□□□□□ -0.09
SDC1-201ENST00000254351 DPYSQ14117 519 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 HABP4Q5JVS0 413 aaKnown RBP14.52□□□□□ -0.09
SDC1-201ENST00000254351 EPHX4Q8IUS5 362 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 PSD4Q8NDX1 1056 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 SHCBP1Q8NEM2 672 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 RSPH1Q8WYR4 309 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 ATXN3LQ9H3M9 355 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 POMKQ9H5K3 350 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 MINDY3Q9H8M7 445 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 ZNF277Q9NRM2 450 aaPredicted RBP14.52□□□□□ -0.09
SDC1-201ENST00000254351 PADI4Q9UM07 663 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 FADS3Q9Y5Q0 445 aa14.52□□□□□ -0.09
SDC1-201ENST00000254351 UBDO15205 165 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 XYLBO75191 536 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 BMP10O95393 424 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 BCL10O95999 233 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 PCNAP12004 261 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 RAD23AP54725 363 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 MCCD1P59942 119 aaPredicted RBP14.51□□□□□ -0.09
SDC1-201ENST00000254351 LAMTOR4Q0VGL1 99 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 VPS26BQ4G0F5 336 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 ZNF618Q5T7W0 954 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 ARHGAP17Q68EM7 881 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 IGFN1Q86VF2 1251 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 HMGCLL1Q8TB92 370 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 NSUN6Q8TEA1 469 aaKnown RBP14.51□□□□□ -0.09
SDC1-201ENST00000254351 HNRNPABQ99729 332 aaKnown RBP14.51□□□□□ -0.09
SDC1-201ENST00000254351 MAGED1Q9Y5V3 778 aaPredicted RBP14.51□□□□□ -0.09
SDC1-201ENST00000254351 ASNSP08243 561 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 ARL4AP40617 200 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 PTPN9P43378 593 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 CLCN3P51790 818 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 INSCQ1MX18 579 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 SOWAHAQ2M3V2 549 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 C6orf10Q5SRN2 563 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 STXBP5Q5T5C0 1151 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 ATF7IP2Q5U623 682 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 NLGN2Q8NFZ4 835 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 ACDQ96AP0 544 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 PRDM16Q9HAZ2 1276 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 BFARQ9NZS9 450 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 PTPRFP10586 1907 aa14.51□□□□□ -0.09
SDC1-201ENST00000254351 SDHDO14521 159 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 CA8P35219 290 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 CSHL1Q14406 222 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 TTC30AQ86WT1 665 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 CEP97Q8IW35 865 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 QKIQ96PU8 341 aaKnown RBP eCLIP14.5□□□□□ -0.09
SDC1-201ENST00000254351 TCF12Q99081 682 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 TBCBQ99426 244 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 CXCL16Q9H2A7 254 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 MORF4L1Q9UBU8 362 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 ZNHIT2Q9UHR6 403 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 POU2F3Q9UKI9 436 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 DSEQ9UL01 958 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 ZNF646O15015 1829 aaPredicted RBP14.5□□□□□ -0.09
SDC1-201ENST00000254351 PFKMP08237 780 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 CCNA2P20248 432 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 SLC7A1P30825 629 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 CDH13P55290 713 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 NFATC3Q12968 1075 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 POU6F1Q14863 301 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 IMPG1Q17R60 797 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 EXOC8Q8IYI6 725 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 DNAJB14Q8TBM8 379 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 ZC3H15Q8WU90 426 aaKnown RBP14.5□□□□□ -0.09
SDC1-201ENST00000254351 CCDC90BQ9GZT6 254 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 UNC93B1Q9H1C4 597 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 CROTQ9UKG9 612 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 USP22Q9UPT9 525 aa14.5□□□□□ -0.09
SDC1-201ENST00000254351 FAM32AQ9Y421 112 aaKnown RBP14.5□□□□□ -0.09
SDC1-201ENST00000254351 GPC6Q9Y625 555 aaPredicted RBP14.5□□□□□ -0.09
SDC1-201ENST00000254351 FER1L6Q2WGJ9 1857 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms