RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 ACER1Q8TDN7 264 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 ASZ1Q8WWH4 475 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 MYOCQ99972 504 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 PLEKHA1Q9HB21 404 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 VPS4AQ9UN37 437 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 CDC14AQ9UNH5 594 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 PRR36Q9H6K5 1346 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 SNX4O95219 450 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 NPR3P17342 541 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 RFC2P35250 354 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 MLLT3P42568 568 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 GSTM5P46439 218 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 FXR1P51114 621 aaKnown RBP eCLIP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 KCNA10Q16322 511 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 MAPK14Q16539 360 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 FAM187BQ17R55 369 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 SEZ6Q53EL9 994 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 PRAMEF19Q5SWL8 479 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 PDZK1Q5T2W1 519 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 TTI2Q6NXR4 508 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 KIAA0408Q6ZU52 694 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 SNX20Q7Z614 316 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 CCDC103Q8IW40 242 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 DEPDC4Q8N2C3 294 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 UXS1Q8NBZ7 420 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 RUSC1Q9BVN2 902 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 ANGPT4Q9Y264 503 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 INSL6Q9Y581 213 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 GLTPD2A6NH11 291 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 BTN3A1O00481 513 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 DDX6P26196 483 aaKnown RBP eCLIP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 CDH13P55290 713 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 JAZF1Q86VZ6 243 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 MSL3Q8N5Y2 521 aaKnown RBP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 SLC2A14Q8TDB8 520 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 PRICKLE1Q96MT3 831 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 TAPBPLQ9BX59 468 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 CDH19Q9H159 772 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 CYP4F12Q9HCS2 524 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 SIRPGQ9P1W8 387 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 C19orf25Q9UFG5 118 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 C1orf232A0A0U1RR37 186 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 TRAFD1O14545 582 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 DGKIO75912 1065 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 NR2F1P10589 423 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 NQO1P15559 274 aaKnown RBP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 YBX3P16989 372 aaKnown RBP eCLIP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 FSHRP23945 695 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 FMO4P31512 558 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 RAB25P57735 213 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 AFTPHQ6ULP2 937 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 GSPT2Q8IYD1 628 aaKnown RBP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 SLC22A17Q8WUG5 538 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 TTYH1Q9H313 450 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 ETNK1Q9HBU6 452 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 USP32Q8NFA0 1604 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 PXDNLA1KZ92 1463 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 LACTBL1A8MY62 500 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 PLSCR1O15162 318 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 ACTR1AP61163 376 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 AMZ1Q400G9 498 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 HYIQ5T013 277 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 ZPBP2Q6X784 338 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 RFX8Q6ZV50 586 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 SLC24A5Q71RS6 500 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 GKN2Q86XP6 184 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 SRFBP1Q8NEF9 429 aaKnown RBP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 ACTRT2Q8TDY3 377 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 HMGB4Q8WW32 186 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 CPNE1Q99829 537 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 AIF1LQ9BQI0 150 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 HGH1Q9BTY7 390 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 UGT2B28Q9BY64 529 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 CHKBQ9Y259 395 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 DLC1Q96QB1 1528 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 A6NCN8 305 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 PAEPP09466 180 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 THRAP10827 490 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 TAS2R41P59536 307 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 FAM153CQ494X1 144 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 PDPK2PQ6A1A2 396 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 SCARA3Q6AZY7 606 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 TTC33Q6PID6 262 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 KCNMB4Q86W47 210 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 RXFP2Q8WXD0 754 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 MTFMTQ96DP5 389 aaKnown RBP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 SGF29Q96ES7 293 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 CAB39LQ9H9S4 337 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 MOCS1Q9NZB8 636 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 SYNPO2Q9UMS6 1093 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 FAM205AQ6ZU69 1335 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 SERPINB7O75635 380 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 KCNH1O95259 989 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 TOP3BO95985 862 aaKnown RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 PLEKP08567 350 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 TSPAN19P0C672 248 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 COMTP21964 271 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CD52P31358 61 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 OR1D2P34982 312 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CTSOP43234 321 aaPredicted RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms