RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 MZB1Q8WU39 189 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 TTC17Q96AE7 1141 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 ZNF669Q96BR6 464 aaPredicted RBP17.1■□□□□ 0.33
CLN3-252ENST00000636907 PSKH2Q96QS6 385 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 CNOT10Q9H9A5 744 aaKnown RBP17.1■□□□□ 0.33
CLN3-252ENST00000636907 VPS28Q9UK41 221 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 CLEC4EQ9ULY5 219 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 SOX13Q9UN79 622 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 ACTL7BQ9Y614 415 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 IKBKGQ9Y6K9 419 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 FAM237BA0A1B0GVD1 139 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 UGT1A9O60656 530 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 FAM155BO75949 473 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 USP1O94782 785 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 CD160O95971 181 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 MDH1P40925 334 aaKnown RBP17.09■□□□□ 0.33
CLN3-252ENST00000636907 RGRP47804 291 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 CBX2Q14781 532 aaPredicted RBP17.09■□□□□ 0.33
CLN3-252ENST00000636907 FYB2Q5VWT5 728 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 RNF43Q68DV7 783 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 LINGO4Q6UY18 593 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 SLC26A11Q86WA9 606 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 SLC25A41Q8N5S1 370 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 UGT1A7Q9HAW7 530 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 UGT1A10Q9HAW8 530 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 UGT1A8Q9HAW9 530 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 PPANQ9NQ55 473 aaKnown RBP17.09■□□□□ 0.33
CLN3-252ENST00000636907 CHRAC1Q9NRG0 131 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 ZMYM5Q9UJ78 669 aa17.09■□□□□ 0.33
CLN3-252ENST00000636907 ZCWPW2A0A1B0GU75 182 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 PAPLNO95428 1278 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 CYBBP04839 570 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 GNGT1P63211 74 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 USP4Q13107 963 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 POU6F1Q14863 301 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 ANKRD20A4Q4UJ75 823 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 PCID2Q5JVF3 399 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 ARID3BQ8IVW6 561 aaPredicted RBP17.08■□□□□ 0.32
CLN3-252ENST00000636907 APCDD1Q8J025 514 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 MFSD3Q96ES6 412 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 KIFC1Q9BW19 673 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 TRABDQ9H4I3 376 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 SFXN1Q9H9B4 322 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 KIF9Q9HAQ2 790 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 ARNT2Q9HBZ2 717 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 HAUS2Q9NVX0 235 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 IL1RAPL1Q9NZN1 696 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 VPS51Q9UID3 782 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 FAM169AQ9Y6X4 670 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 MIA3Q5JRA6 1907 aa17.08■□□□□ 0.32
CLN3-252ENST00000636907 IQANK1A0A1B0GTG1 560 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 A0A1W2PPM1 405 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 SHOX2O60902 331 aaPredicted RBP17.07■□□□□ 0.32
CLN3-252ENST00000636907 BRAFP15056 766 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 NMBRP28336 390 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 LMAN2Q12907 356 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 SMAD1Q15797 465 aaKnown RBP17.07■□□□□ 0.32
CLN3-252ENST00000636907 CCDC117Q8IWD4 279 aaPredicted RBP17.07■□□□□ 0.32
CLN3-252ENST00000636907 DCAF4L2Q8NA75 395 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.07■□□□□ 0.32
CLN3-252ENST00000636907 FIBINQ8TAL6 211 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 CERS2Q96G23 380 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 EXOC2Q96KP1 924 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 NSMCE3Q96MG7 304 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 SLC17A6Q9P2U8 582 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 ZNF180Q9UJW8 692 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 TRANK1O15050 2925 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 MYLKQ15746 1914 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 LOC285095A0A1B0GVY8 99 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 TMEM120BA0PK00 339 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 TMCC1O94876 653 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 ATXN1LP0C7T5 689 aaKnown RBP17.07■□□□□ 0.32
CLN3-252ENST00000636907 ERVK-10P10266 1014 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 CHN1P15882 459 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 TCF3P15923 654 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 CR2P20023 1033 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 CD70P32970 193 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 MGAT5Q09328 741 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 FRG1Q14331 258 aaKnown RBP17.07■□□□□ 0.32
CLN3-252ENST00000636907 SLC1A5Q15758 541 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 PKN3Q6P5Z2 889 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 MARK2Q7KZI7 788 aaKnown RBP17.07■□□□□ 0.32
CLN3-252ENST00000636907 TMEM25Q86YD3 366 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 CDKL2Q92772 493 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 ZNF778Q96MU6 729 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 LINC00597Q9H2U6 94 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 IGFLR1Q9H665 355 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 NOD2Q9HC29 1040 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 SENP1Q9P0U3 644 aa17.07■□□□□ 0.32
CLN3-252ENST00000636907 KIAA1522Q9P206 1035 aaPredicted RBP17.07■□□□□ 0.32
CLN3-252ENST00000636907 CCDC78A2IDD5 438 aa17.06■□□□□ 0.32
CLN3-252ENST00000636907 INSIG1O15503 277 aa17.06■□□□□ 0.32
CLN3-252ENST00000636907 SERPINF2P08697 491 aa17.06■□□□□ 0.32
CLN3-252ENST00000636907 SERPINH1P50454 418 aaKnown RBP17.06■□□□□ 0.32
CLN3-252ENST00000636907 SCNN1BP51168 640 aa17.06■□□□□ 0.32
CLN3-252ENST00000636907 MPP2Q14168 576 aa17.06■□□□□ 0.32
CLN3-252ENST00000636907 INO80DQ53TQ3 878 aaPredicted RBP17.06■□□□□ 0.32
CLN3-252ENST00000636907 SIRPB2Q5JXA9 342 aa17.06■□□□□ 0.32
CLN3-252ENST00000636907 RASSF3Q86WH2 238 aa17.06■□□□□ 0.32
CLN3-252ENST00000636907 RNF135Q8IUD6 432 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms