RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 CENPIQ92674 756 aaPredicted RBP1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 INPP5DQ92835 1189 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 KAZALD1Q96I82 304 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 WDR24Q96S15 920 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 NUDT22Q9BRQ3 303 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 RTKNQ9BST9 563 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 MECRQ9BV79 373 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 TRIM31Q9BZY9 425 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 WDR12Q9GZL7 423 aaKnown RBP1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 EGLN1Q9GZT9 426 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 CLPBQ9H078 707 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 SFXN1Q9H9B4 322 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 PPCSQ9HAB8 311 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 SDF2L1Q9HCN8 221 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 PDE11AQ9HCR9 933 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 NECTIN3Q9NQS3 549 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 FSCN3Q9NQT6 498 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 SIRT3Q9NTG7 399 aaPredicted RBP1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 TAGLN3Q9UI15 199 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 HERC5Q9UII4 1024 aaKnown RBP1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 FBXO4Q9UKT5 387 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 CA14Q9ULX7 337 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 NFU1Q9UMS0 254 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 DTNAQ9Y4J8 743 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 PTGDR2Q9Y5Y4 395 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 COMMD10Q9Y6G5 202 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 TJP1Q07157 1748 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 NKTRP30414 1462 aaKnown RBP1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 SHANK2Q9UPX8 1470 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 NPHP4O75161 1426 aaPredicted RBP1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 CASKIN1Q8WXD9 1431 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 ZNF646O15015 1829 aaPredicted RBP1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 KIF13BQ9NQT8 1826 aa1.22□□□□□ -2.21
SMARCB1-209ENST00000635578 SIPA1L3O60292 1781 aaPredicted RBP1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 SPATA31A1Q5TZJ5 1347 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 DDX60Q8IY21 1712 aaKnown RBP1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 TNRC6CQ9HCJ0 1690 aaKnown RBP1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 LRRC9Q6ZRR7 1453 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 PLEKHH2Q8IVE3 1493 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 ARHGAP23Q9P227 1491 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 KIR2DS5A0A0G2JLQ3 304 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 TCRBV7S3A2A0A539 114 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 CXorf65A6NEN9 183 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 C3orf70A6NLC5 250 aaPredicted RBP1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 E7EVH7 732 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 KIR2DS3K7RE56 304 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 M0QZQ0 153 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 RHODO00212 210 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 PCDH17O14917 1159 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 SYN3O14994 580 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 NKX2-8O15522 239 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 PRPF4O43172 522 aaKnown RBP eCLIP1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 ANP32CO43423 234 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 BUB3O43684 328 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 CCNT1O60563 726 aaKnown RBP1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 NBNO60934 754 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 CNTN5O94779 1100 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 KAT7O95251 611 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 LARGE1O95461 756 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 ZBTB11O95625 1053 aaPredicted RBP1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 NTSR2O95665 410 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 IGLV2-11P01706 119 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 MBPP02686 304 aaPredicted RBP1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 PRSS2P07478 247 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 SP1P08047 785 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 HOXC6P09630 235 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 RXRAP19793 462 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 TGM2P21980 687 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 SERPINA4P29622 427 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 KRT2P35908 639 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 RFX2P48378 723 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 TRAPPC10P48553 1259 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 PPM1FP49593 454 aaPredicted RBP1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 CYP2J2P51589 502 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 RCAN1P53805 252 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 DLX5P56178 289 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 POLE2P56282 527 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 TAS2R50P59544 299 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 RPL15P61313 204 aaKnown RBP1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 RBM6P78332 1123 aaKnown RBP1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 POU5F1BQ06416 359 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 GOLGA8FQ08AF8 430 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 PMPCAQ10713 525 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 ALKBH1Q13686 389 aaKnown RBP1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 PTK2BQ14289 1009 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 RBM39Q14498 530 aaKnown RBP1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 TAF5Q15542 800 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 LRRC24Q50LG9 513 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 RUNDC3AQ59EK9 446 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 ALG10Q5BKT4 473 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 ALG10BQ5I7T1 473 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 PIK3CD-AS1Q5SR53 167 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 BSPRYQ5W0U4 402 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 FAM90A2PQ658T7 463 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 TTLL5Q6EMB2 1281 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 NFRKBQ6P4R8 1299 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 TMEM88Q6PEY1 159 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 LRIG3Q6UXM1 1119 aa1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 MEX3BQ6ZN04 569 aaKnown RBP1.21□□□□□ -2.22
SMARCB1-209ENST00000635578 FAM83HQ6ZRV2 1179 aaPredicted RBP1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms