RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 KCNT1Q5JUK3 1230 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 SH2D3CQ8N5H7 860 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 CCDC185Q8N715 623 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 DCAF4L2Q8NA75 395 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 MNS1Q8NEH6 495 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 DEFB124Q8NES8 71 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 MYRIPQ8NFW9 859 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 EXD1Q8NHP7 514 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 SNX19Q92543 992 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 RAPGEF5Q92565 580 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 CCDC114Q96M63 670 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 ZYG11BQ9C0D3 744 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 OSBPL2Q9H1P3 480 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 GPATCH2LQ9NWQ4 482 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 DDX56Q9NY93 547 aaKnown RBP12.9□□□□□ -0.34
PNKP-217ENST00000625216 MPP6Q9NZW5 540 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 RNF14Q9UBS8 474 aa12.9□□□□□ -0.34
PNKP-217ENST00000625216 TTC7AQ9ULT0 858 aaPredicted RBP12.9□□□□□ -0.34
PNKP-217ENST00000625216 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.9□□□□□ -0.34
PNKP-217ENST00000625216 MUC22E2RYF6 1773 aaPredicted RBP12.89□□□□□ -0.35
PNKP-217ENST00000625216 A0A1W2PPC4 97 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 LRRD1A4D1F6 860 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 CTAGE15A4D2H0 777 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 C3orf70A6NLC5 250 aaPredicted RBP12.89□□□□□ -0.35
PNKP-217ENST00000625216 C10orf142B7Z368 130 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 C1QTNF3-AMACRE9PGA6 284 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 PRPSAP2O60256 369 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 FGGP02679 453 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 KRT7P08729 469 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 CTAGE8P0CG41 777 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 ETFBP38117 255 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 PAFAH1B1P43034 410 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 PSMD8P48556 350 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 ARSEP51690 589 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 RACK1P63244 317 aaKnown RBP12.89□□□□□ -0.35
PNKP-217ENST00000625216 CCDC15Q0P6D6 951 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 LLGL1Q15334 1064 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 SIX1Q15475 284 aaPredicted RBP12.89□□□□□ -0.35
PNKP-217ENST00000625216 CA9Q16790 459 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 RETSATQ6NUM9 610 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 SCYL2Q6P3W7 929 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 NCEH1Q6PIU2 408 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 MFSD7Q6UXD7 560 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 CTAGE6Q86UF2 777 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 SLC13A5Q86YT5 568 aaPredicted RBP12.89□□□□□ -0.35
PNKP-217ENST00000625216 CTAGE4Q8IX94 777 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 AADATQ8N5Z0 425 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 ATP11CQ8NB49 1132 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 HSPH1Q92598 858 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 FAM131CQ96AQ9 280 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 SKA1Q96BD8 255 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 RNF25Q96BH1 459 aaPredicted RBP12.89□□□□□ -0.35
PNKP-217ENST00000625216 RBM41Q96IZ5 413 aaKnown RBP12.89□□□□□ -0.35
PNKP-217ENST00000625216 NCAPGQ9BPX3 1015 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 TM9SF3Q9HD45 589 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 TMPRSS4Q9NRS4 437 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 OR12D3Q9UGF7 316 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 SERGEFQ9UGK8 458 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 VPS51Q9UID3 782 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 PPM1HQ9ULR3 514 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 PCDHGB2Q9Y5G2 931 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 SNX10Q9Y5X0 201 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 TNRC6BQ9UPQ9 1833 aaKnown RBP12.89□□□□□ -0.35
PNKP-217ENST00000625216 PI4KAP42356 2102 aa12.89□□□□□ -0.35
PNKP-217ENST00000625216 TPRP12270 2363 aaKnown RBP12.88□□□□□ -0.35
PNKP-217ENST00000625216 A0A1B0GVT2 93 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 TCRBV7S2A1N4TA0A589 114 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 FAM47DPA6NHR8 397 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 DFNA5O60443 496 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 ZRANB2O95218 330 aaKnown RBP eCLIP12.88□□□□□ -0.35
PNKP-217ENST00000625216 TRIM16O95361 564 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 IGHV4-34P06331 123 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 CD48P09326 243 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 SRCP12931 536 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 VAV1P15498 845 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 NUDT1P36639 197 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 CSNK1EP49674 416 aaKnown RBP12.88□□□□□ -0.35
PNKP-217ENST00000625216 SUZ12Q15022 739 aaKnown RBP12.88□□□□□ -0.35
PNKP-217ENST00000625216 HLA-BQ31612 363 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 ARTNQ5T4W7 220 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 SPOCD1Q6ZMY3 1216 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 TFAP2DQ7Z6R9 452 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 CCDC50Q8IVM0 306 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 NOA1Q8NC60 698 aaKnown RBP12.88□□□□□ -0.35
PNKP-217ENST00000625216 SPATA4Q8NEY3 305 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 OR2I1PQ8NGU4 316 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 OR14C36Q8NHC7 312 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 TEKT4Q8WW24 435 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 NTAN1Q96AB6 310 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 ORAI3Q9BRQ5 295 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 GAREM1Q9H706 876 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.88□□□□□ -0.35
PNKP-217ENST00000625216 ZNF212Q9UDV6 495 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.88□□□□□ -0.35
PNKP-217ENST00000625216 ANKRD6Q9Y2G4 727 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 V9GYY5 206 aaPredicted RBP12.88□□□□□ -0.35
PNKP-217ENST00000625216 CACNA1EQ15878 2313 aa12.88□□□□□ -0.35
PNKP-217ENST00000625216 ACACBO00763 2458 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 hCG_1818297A0A087WSY0 165 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 A0A0D9SEW6 157 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms