RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PKD2L2Q9NZM6 624 aa10.96□□□□□ -0.66
UPF3A-212ENST00000619079 PSME2Q9UL46 239 aa10.96□□□□□ -0.66
UPF3A-212ENST00000619079 CORINQ9Y5Q5 1042 aa10.96□□□□□ -0.66
UPF3A-212ENST00000619079 SNX9Q9Y5X1 595 aa10.96□□□□□ -0.66
UPF3A-212ENST00000619079 TRPC5OSA6NMA1 111 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 ZNF487B1APH4 448 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 CLDN25C9JDP6 229 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 METTL18O95568 372 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 CKMT2P17540 419 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 TFEBP19484 476 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 MPSTP25325 297 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 ADORA2AP29274 412 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 ARPC4P59998 168 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 KCTD2Q14681 263 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 ZNF394Q53GI3 561 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 BOLA3Q53S33 107 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 ZNF618Q5T7W0 954 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 AGAP7PQ5VUJ5 663 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 CPNE9Q8IYJ1 553 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 TMCO5AQ8N6Q1 288 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 GOLM1Q8NBJ4 401 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 OR5B17Q8NGF7 314 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 OR13F1Q8NGS4 319 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 SLC7A14Q8TBB6 771 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 ALPK1Q96QP1 1244 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 MSTO1Q9BUK6 570 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 GATA5Q9BWX5 397 aaPredicted RBP10.95□□□□□ -0.66
UPF3A-212ENST00000619079 NMRAL1Q9HBL8 299 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 VTA1Q9NP79 307 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 KLHL3Q9UH77 587 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 FBXO40Q9UH90 709 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 COPG1Q9Y678 874 aaKnown RBP10.95□□□□□ -0.66
UPF3A-212ENST00000619079 GRID2O43424 1007 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 ATG7O95352 703 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 TCF7P36402 384 aaPredicted RBP10.95□□□□□ -0.66
UPF3A-212ENST00000619079 GNA12Q03113 381 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 NSUN2Q08J23 767 aaKnown RBP eCLIP10.95□□□□□ -0.66
UPF3A-212ENST00000619079 ARHGEF6Q15052 776 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 KCNJ8Q15842 424 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 ARL13BQ3SXY8 428 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 LIPMQ5VYY2 423 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 GPR142Q7Z601 462 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 DHFR2Q86XF0 187 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 WDR49Q8IV35 697 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 ZC3H7AQ8IWR0 971 aaKnown RBP10.95□□□□□ -0.66
UPF3A-212ENST00000619079 HACE1Q8IYU2 909 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 CBR4Q8N4T8 237 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 CHST13Q8NET6 341 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 OR2T34Q8NGX1 318 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 OR2T3Q8NH03 318 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 MCRS1Q96EZ8 462 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 MAGED4Q96JG8 741 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 PEBP4Q96S96 227 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 RMDN3Q96TC7 470 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 ADPGKQ9BRR6 497 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 PCDHAC1Q9H158 963 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 RAD21L1Q9H4I0 556 aa10.95□□□□□ -0.66
UPF3A-212ENST00000619079 E7ENX8 843 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 CLOCKO15516 846 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 HMGCRP04035 888 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 POLBP06746 335 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 GNAO1P09471 354 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 CD19P15391 556 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 CD1EP15812 388 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 JUNBP17275 347 aaPredicted RBP10.94□□□□□ -0.66
UPF3A-212ENST00000619079 GPD1P21695 349 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 PAX3P23760 479 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 TKTP29401 623 aaKnown RBP10.94□□□□□ -0.66
UPF3A-212ENST00000619079 HLCSP50747 726 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 MFSD4BQ5TF39 518 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 TMEM214Q6NUQ4 689 aaKnown RBP10.94□□□□□ -0.66
UPF3A-212ENST00000619079 PTAR1Q7Z6K3 402 aaPredicted RBP10.94□□□□□ -0.66
UPF3A-212ENST00000619079 PLEKHH3Q7Z736 793 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 CLEC14AQ86T13 490 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 SNX31Q8N9S9 440 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 SHCBP1Q8NEM2 672 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 S100ZQ8WXG8 99 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 FEM1CQ96JP0 617 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 TBCBQ99426 244 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 RBBP8Q99708 897 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 ZNF670Q9BS34 389 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 NDEL1Q9GZM8 345 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 NACA2Q9H009 215 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 EIF2B3Q9NR50 452 aaKnown RBP10.94□□□□□ -0.66
UPF3A-212ENST00000619079 PSAT1Q9Y617 370 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 SMCHD1A6NHR9 2005 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 A0A096LPK6 155 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 NFIBO00712 420 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 TIPRLO75663 272 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 PIGNO95427 931 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 LIMK2P53671 638 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 ATP6V0D1P61421 351 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 NME3Q13232 169 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 INPP5AQ14642 412 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 CCDC14Q49A88 953 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 GLRA4Q5JXX5 417 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 SPANXN3Q5MJ09 141 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 DCLK2Q8N568 766 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 PQLC3Q8N755 202 aa10.94□□□□□ -0.66
UPF3A-212ENST00000619079 PTCD2Q8WV60 388 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms