RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 PPP2CAP67775 309 aa15.44■□□□□ 0.06
LIG1-219ENST00000600055 IRX4P78413 519 aa15.44■□□□□ 0.06
LIG1-219ENST00000600055 PAFAH1B3Q15102 231 aaKnown RBP15.44■□□□□ 0.06
LIG1-219ENST00000600055 TRIM61Q5EBN2 209 aa15.44■□□□□ 0.06
LIG1-219ENST00000600055 C11orf63Q6NUN7 778 aa15.44■□□□□ 0.06
LIG1-219ENST00000600055 DAAM2Q86T65 1068 aa15.44■□□□□ 0.06
LIG1-219ENST00000600055 ZCCHC9Q8N567 271 aaKnown RBP15.44■□□□□ 0.06
LIG1-219ENST00000600055 ATPAF2Q8N5M1 289 aa15.44■□□□□ 0.06
LIG1-219ENST00000600055 C12orf50Q8NA57 414 aaPredicted RBP15.44■□□□□ 0.06
LIG1-219ENST00000600055 TSEN2Q8NCE0 465 aaKnown RBP15.44■□□□□ 0.06
LIG1-219ENST00000600055 LRRN4Q8WUT4 740 aa15.44■□□□□ 0.06
LIG1-219ENST00000600055 GDAP1L1Q96MZ0 367 aa15.44■□□□□ 0.06
LIG1-219ENST00000600055 RNF157Q96PX1 679 aa15.44■□□□□ 0.06
LIG1-219ENST00000600055 PCED1AQ9H1Q7 454 aa15.44■□□□□ 0.06
LIG1-219ENST00000600055 EBF2Q9HAK2 575 aa15.44■□□□□ 0.06
LIG1-219ENST00000600055 DYRK4Q9NR20 520 aa15.44■□□□□ 0.06
LIG1-219ENST00000600055 NUMA1Q14980 2115 aa15.44■□□□□ 0.06
LIG1-219ENST00000600055 TNRC6BQ9UPQ9 1833 aaKnown RBP15.43■□□□□ 0.06
LIG1-219ENST00000600055 NUP205Q92621 2012 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 TBC1D3DA0A087WVF3 549 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 TBC1D3IA0A087WXS9 549 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 TBC1D3EA0A087X179 549 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 TBC1D3KA0A087X1G2 549 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 TBC1D3FA6NER0 549 aaPredicted RBP15.43■□□□□ 0.06
LIG1-219ENST00000600055 BTNL10A8MVZ5 291 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 C10orf142B7Z368 130 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 TBC1D3LB9A6J9 549 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 KHNYNO15037 678 aaKnown RBP15.43■□□□□ 0.06
LIG1-219ENST00000600055 MUSKO15146 869 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 GJB3O75712 270 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 CFIP05156 583 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 UGT2B4P06133 528 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 TBC1D3HP0C7X1 549 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 ITGB7P26010 798 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 MARCKSL1P49006 195 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 GBE1Q04446 702 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 SLC10A7Q0GE19 358 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 SLC10A2Q12908 348 aaPredicted RBP15.43■□□□□ 0.06
LIG1-219ENST00000600055 LBRQ14739 615 aaKnown RBP15.43■□□□□ 0.06
LIG1-219ENST00000600055 LLGL1Q15334 1064 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 DUOXA1Q1HG43 343 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 AASDHQ4L235 1098 aaPredicted RBP15.43■□□□□ 0.06
LIG1-219ENST00000600055 TBC1D3GQ6DHY5 549 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 TBC1D3CQ6IPX1 549 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 MFSD7Q6UXD7 560 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 ERN2Q76MJ5 926 aaKnown RBP15.43■□□□□ 0.06
LIG1-219ENST00000600055 PARS2Q7L3T8 475 aaKnown RBP15.43■□□□□ 0.06
LIG1-219ENST00000600055 TBC1D3Q8IZP1 549 aaPredicted RBP15.43■□□□□ 0.06
LIG1-219ENST00000600055 KRT35Q92764 455 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 PPP1R16AQ96I34 528 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 KLHL32Q96NJ5 620 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 ORAI3Q9BRQ5 295 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 CINPQ9BW66 212 aaPredicted RBP15.43■□□□□ 0.06
LIG1-219ENST00000600055 HDAC8Q9BY41 377 aa15.43■□□□□ 0.06
LIG1-219ENST00000600055 DDX56Q9NY93 547 aaKnown RBP15.43■□□□□ 0.06
LIG1-219ENST00000600055 EP300Q09472 2414 aaPredicted RBP15.43■□□□□ 0.06
LIG1-219ENST00000600055 PIEZO1Q92508 2521 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.42■□□□□ 0.06
LIG1-219ENST00000600055 LNP1A1A4G5 178 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 TTC24A2A3L6 582 aaPredicted RBP15.42■□□□□ 0.06
LIG1-219ENST00000600055 SLC7A4O43246 635 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 PSTPIP1O43586 416 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 PIGNO95427 931 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 HOXD12P35452 270 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 DPP6P42658 865 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 LMNB2Q03252 620 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 GALNT2Q10471 571 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 ZNF805Q5CZA5 627 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 TMCO4Q5TGY1 634 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 SLC23A3Q6PIS1 610 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 GDPD4Q6W3E5 623 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 RFX6Q8HWS3 928 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 PLD5Q8N7P1 536 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 C1orf216Q8TAB5 229 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 NSMCE3Q96MG7 304 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 ZNF599Q96NL3 588 aa15.42■□□□□ 0.06
LIG1-219ENST00000600055 RIF1Q5UIP0 2472 aaKnown RBP15.42■□□□□ 0.06
LIG1-219ENST00000600055 FAM186AA6NE01 2351 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 CEP192Q8TEP8 1941 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 MACROD2A1Z1Q3 448 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 GRID2IPA4D2P6 1211 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 C16orf96A6NNT2 1141 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 ZNF487B1APH4 448 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 SERPINF2P08697 491 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 ADRB3P13945 408 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 GNSP15586 552 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 CD27P26842 260 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 MAT2AP31153 395 aaKnown RBP15.41■□□□□ 0.06
LIG1-219ENST00000600055 GARSP41250 739 aaKnown RBP15.41■□□□□ 0.06
LIG1-219ENST00000600055 ABL2P42684 1182 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 CCR5P51681 352 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 NEK3P51956 506 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 DYNLT1P63172 113 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 RAD51Q06609 339 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 RFTN1Q14699 578 aaPredicted RBP15.41■□□□□ 0.06
LIG1-219ENST00000600055 ODF2Q5BJF6 829 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 LRRC73Q5JTD7 316 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 SLC9A4Q6AI14 798 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 FBXL19Q6PCT2 694 aa15.41■□□□□ 0.06
LIG1-219ENST00000600055 NPNTQ6UXI9 565 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms