RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 KIAA1328Q86T90 577 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 NT5DC3Q86UY8 548 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 PGBD5Q8N414 524 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 EXOC2Q96KP1 924 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 ZNF599Q96NL3 588 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 HDAC8Q9BY41 377 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 PCED1AQ9H1Q7 454 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 EBF2Q9HAK2 575 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 GMEB2Q9UKD1 530 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 SPTBN4Q9H254 2564 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 ATXN2Q99700 1313 aaKnown RBP19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 C1QTNF3-AMACRE9PGA6 284 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 SLC7A4O43246 635 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 PLRG1O43660 514 aaKnown RBP19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 PRNPP04156 253 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 CTNNA2P26232 953 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 SNRPD1P62314 119 aaKnown RBP19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 RFTN1Q14699 578 aaPredicted RBP19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 DCAF12L1Q5VU92 463 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 FAM46CQ5VWP2 391 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 SPOCD1Q6ZMY3 1216 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 ZNF662Q6ZS27 426 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 TEX26Q8N6G2 289 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 LRRN4Q8WUT4 740 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 MAML1Q92585 1016 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 ALG3Q92685 438 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 FATE1Q969F0 183 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 BIRC7Q96CA5 298 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 CCDC114Q96M63 670 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 OLFM3Q96PB7 478 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 PSKH2Q96QS6 385 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 SEMA4GQ9NTN9 838 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 EVLQ9UI08 416 aaPredicted RBP19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 PCDHA3Q9Y5H8 950 aa19.79■□□□□ 0.76
SHKBP1-221ENST00000599833 ADAMTS9Q9P2N4 1935 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 hCG_1818297A0A087WSY0 165 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 PATE3B3GLJ2 98 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 ZNF806P0C7X5 589 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 TNNT1P13805 278 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 ITGB7P26010 798 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 CSNK1DP48730 415 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 DNA2P51530 1060 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 RHOAP61586 193 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 CREB5Q02930 508 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 KIF5AQ12840 1032 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 IHHQ14623 411 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 LBRQ14739 615 aaKnown RBP19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 CSRP2Q16527 193 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 TMCO4Q5TGY1 634 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 TCEAL6Q6IPX3 200 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 NCEH1Q6PIU2 408 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 NPNTQ6UXI9 565 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 PARS2Q7L3T8 475 aaKnown RBP19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 CYP2U1Q7Z449 544 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 SYT12Q8IV01 421 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 TCEAL3Q969E4 200 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 LRIG1Q96JA1 1093 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 GDAP1L1Q96MZ0 367 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 TSGA13Q96PP4 275 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 OMDQ99983 421 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 ZDHHC6Q9H6R6 413 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 SP110Q9HB58 689 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 RXFP3Q9NSD7 469 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 NCKAP1Q9Y2A7 1128 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 LRRK1Q38SD2 2015 aa19.78■□□□□ 0.76
SHKBP1-221ENST00000599833 MACROD2A1Z1Q3 448 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 KPNA3O00505 521 aaPredicted RBP19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 NDUFS2O75306 463 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 PALMO75781 387 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 POP4O95707 220 aaKnown RBP19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 KRT10P13645 584 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 MAOBP27338 520 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 ABL2P42684 1182 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 RECQLP46063 649 aaPredicted RBP19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 PPP2CBP62714 309 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 PPP2CAP67775 309 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 NSUN2Q08J23 767 aaKnown RBP eCLIP19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 SF3A2Q15428 464 aaKnown RBP19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 KIAA0895LQ68EN5 471 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 ERN2Q76MJ5 926 aaKnown RBP19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 ZSWIM9Q86XI8 627 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 LRRC49Q8IUZ0 686 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 ATPAF2Q8N5M1 289 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 OR2T34Q8NGX1 318 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 EXD1Q8NHP7 514 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 KIAA1524Q8TCG1 905 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 FOXJ1Q92949 421 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 HDAC11Q96DB2 347 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 CPEB1Q9BZB8 566 aaKnown RBP19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 KCNF1Q9H3M0 494 aa19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 FARP1Q9Y4F1 1045 aaPredicted RBP19.77■□□□□ 0.76
SHKBP1-221ENST00000599833 TP53BP1Q12888 1972 aaPredicted RBP19.77■□□□□ 0.75
SHKBP1-221ENST00000599833 TSPAN11A1L157 253 aa19.76■□□□□ 0.75
SHKBP1-221ENST00000599833 KRIT1O00522 736 aa19.76■□□□□ 0.75
SHKBP1-221ENST00000599833 DDX3YO15523 660 aaKnown RBP19.76■□□□□ 0.75
SHKBP1-221ENST00000599833 LATO43561 262 aa19.76■□□□□ 0.75
SHKBP1-221ENST00000599833 PIGNO95427 931 aa19.76■□□□□ 0.75
SHKBP1-221ENST00000599833 IGSF6O95976 241 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms