RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 PAK4O96013 591 aaPredicted RBP9.96□□□□□ -0.82
VRK3-216ENST00000599342 GSRP00390 522 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 UGT2B4P06133 528 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 ACP1P24666 158 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 EPHB2P29323 1055 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 RABIFP47224 123 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 AIF1P55008 147 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 CLDN6P56747 220 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 RAD51Q06609 339 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 C1QBPQ07021 282 aaKnown RBP9.96□□□□□ -0.82
VRK3-216ENST00000599342 PTP4A2Q12974 167 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 TARDBPQ13148 414 aaKnown RBP eCLIP9.96□□□□□ -0.82
VRK3-216ENST00000599342 ZNF211Q13398 564 aaPredicted RBP9.96□□□□□ -0.82
VRK3-216ENST00000599342 COL28A1Q2UY09 1125 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 PROX2Q3B8N5 592 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 ZNF805Q5CZA5 627 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 CCDC183Q5T5S1 534 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 DCUN1D2Q6PH85 259 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 WDR59Q6PJI9 974 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 KYAT3Q6YP21 454 aaKnown RBP9.96□□□□□ -0.82
VRK3-216ENST00000599342 LEKR1Q6ZMV7 388 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 MON1BQ7L1V2 547 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 DCP2Q8IU60 420 aaKnown RBP9.96□□□□□ -0.82
VRK3-216ENST00000599342 SLC22A18ASQ8N1D0 253 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 RTL3Q8N8U3 475 aaKnown RBP9.96□□□□□ -0.82
VRK3-216ENST00000599342 OR4C6Q8NH72 309 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 HNRNPLLQ8WVV9 542 aaKnown RBP9.96□□□□□ -0.82
VRK3-216ENST00000599342 RAB7BQ96AH8 199 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 IFT43Q96FT9 208 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 GDAP1L1Q96MZ0 367 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 ERGIC2Q96RQ1 377 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 EPAS1Q99814 870 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 AGPAT1Q99943 283 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 CATSPERBQ9H7T0 1116 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 SCUBE2Q9NQ36 999 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 DNAJC28Q9NX36 388 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 IPO11Q9UI26 975 aaKnown RBP9.96□□□□□ -0.82
VRK3-216ENST00000599342 NEU3Q9UQ49 428 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 HS3ST3A1Q9Y663 406 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 AK5Q9Y6K8 562 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 FREM2Q5SZK8 3169 aa9.96□□□□□ -0.82
VRK3-216ENST00000599342 DOCK4Q8N1I0 1966 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 C16orf96A6NNT2 1141 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 TRIM38O00635 465 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 KDELR3O43731 214 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 TMCC1O94876 653 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 POP4O95707 220 aaKnown RBP9.95□□□□□ -0.82
VRK3-216ENST00000599342 CD160O95971 181 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 IGSF6O95976 241 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 MBD3O95983 291 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 FERP16591 822 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 GKP32189 559 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 ZNF143P52747 638 aaPredicted RBP9.95□□□□□ -0.82
VRK3-216ENST00000599342 RHOAP61586 193 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 HNRNPKP61978 463 aaKnown RBP eCLIP9.95□□□□□ -0.82
VRK3-216ENST00000599342 E2F1Q01094 437 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 FGL2Q14314 439 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 MYLK3Q32MK0 819 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 ATXN7L2Q5T6C5 722 aaPredicted RBP9.95□□□□□ -0.82
VRK3-216ENST00000599342 PPP1R2P3Q6NXS1 205 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 TMC6Q7Z403 805 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 PDZD3Q86UT5 571 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 PARGQ86W56 976 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 PYROXD2Q8N2H3 581 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 SLC25A45Q8N413 288 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 AOPEPQ8N6M6 819 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 DENND6BQ8NEG7 585 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 CASKIN2Q8WXE0 1202 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 KLHL32Q96NJ5 620 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 DCBLD2Q96PD2 775 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 NCAPGQ9BPX3 1015 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 DUSP23Q9BVJ7 150 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 MAGEB5Q9BZ81 275 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 NRSN2Q9GZP1 204 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 NAT10Q9H0A0 1025 aaKnown RBP9.95□□□□□ -0.82
VRK3-216ENST00000599342 UCKL1Q9NWZ5 548 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 DONSONQ9NYP3 566 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 NLGN3Q9NZ94 848 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 CLCA2Q9UQC9 943 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 CABIN1Q9Y6J0 2220 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 CEP295Q9C0D2 2601 aa9.95□□□□□ -0.82
VRK3-216ENST00000599342 SPTY2D1-AS1A0A0U1RR47 76 aa9.94□□□□□ -0.82
VRK3-216ENST00000599342 POM121BA6NF01 834 aa9.94□□□□□ -0.82
VRK3-216ENST00000599342 IGLON5A6NGN9 336 aa9.94□□□□□ -0.82
VRK3-216ENST00000599342 LRRC10BA6NIK2 292 aa9.94□□□□□ -0.82
VRK3-216ENST00000599342 XPAP23025 273 aaPredicted RBP9.94□□□□□ -0.82
VRK3-216ENST00000599342 ABL2P42684 1182 aa9.94□□□□□ -0.82
VRK3-216ENST00000599342 DUSP3P51452 185 aaPredicted RBP9.94□□□□□ -0.82
VRK3-216ENST00000599342 YBEYP58557 167 aaPredicted RBP9.94□□□□□ -0.82
VRK3-216ENST00000599342 TPI1P60174 286 aa9.94□□□□□ -0.82
VRK3-216ENST00000599342 RPL7AP62424 266 aaKnown RBP9.94□□□□□ -0.82
VRK3-216ENST00000599342 INSM1Q01101 510 aaPredicted RBP9.94□□□□□ -0.82
VRK3-216ENST00000599342 SEMG2Q02383 582 aa9.94□□□□□ -0.82
VRK3-216ENST00000599342 PDE1CQ14123 709 aaPredicted RBP9.94□□□□□ -0.82
VRK3-216ENST00000599342 PARP15Q460N3 678 aa9.94□□□□□ -0.82
VRK3-216ENST00000599342 INO80DQ53TQ3 878 aaPredicted RBP9.94□□□□□ -0.82
VRK3-216ENST00000599342 ZNF542PQ5EBM4 170 aa9.94□□□□□ -0.82
VRK3-216ENST00000599342 ACAD10Q6JQN1 1059 aa9.94□□□□□ -0.82
VRK3-216ENST00000599342 GDPD4Q6W3E5 623 aa9.94□□□□□ -0.82
VRK3-216ENST00000599342 TTC7BQ86TV6 843 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms