RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 TPI1P60174 286 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 TPM4P67936 248 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 DPYSQ14117 519 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 ASTE1Q2TB18 679 aaPredicted RBP12.35□□□□□ -0.43
LIG1-217ENST00000599165 SKOR2Q2VWA4 1001 aaPredicted RBP12.35□□□□□ -0.43
LIG1-217ENST00000599165 PARP15Q460N3 678 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 ERMARDQ5T6L9 678 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 KDM7AQ6ZMT4 941 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 ARHGAP36Q6ZRI8 547 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 KANSL1Q7Z3B3 1105 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 GLRX5Q86SX6 157 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 SLCO6A1Q86UG4 719 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 HORMAD1Q86X24 394 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 KLK6Q92876 244 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 CELF6Q96J87 481 aaKnown RBP12.35□□□□□ -0.43
LIG1-217ENST00000599165 BTBD6Q96KE9 485 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 CCDC114Q96M63 670 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 NSMCE3Q96MG7 304 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 SLC39A8Q9C0K1 460 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 ZDHHC6Q9H6R6 413 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 AASDHPPTQ9NRN7 309 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 CWC15Q9P013 229 aaKnown RBP12.35□□□□□ -0.43
LIG1-217ENST00000599165 TPX2Q9ULW0 747 aaKnown RBP12.35□□□□□ -0.43
LIG1-217ENST00000599165 FADS3Q9Y5Q0 445 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 SHROOM3Q8TF72 1996 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 WDFY3Q8IZQ1 3526 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 TLR4O00206 839 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 EEF2KO00418 725 aaKnown RBP12.34□□□□□ -0.43
LIG1-217ENST00000599165 RAD51BO15315 384 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 BUB1O43683 1085 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 HYAL3O43820 417 aaPredicted RBP12.34□□□□□ -0.43
LIG1-217ENST00000599165 ERCC2P18074 760 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 HTR7P34969 479 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 PCK1P35558 622 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 RGRP47804 291 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 CCT8P50990 548 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 NEK3P51956 506 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 SLC25A11Q02978 314 aaKnown RBP12.34□□□□□ -0.43
LIG1-217ENST00000599165 TRIP6Q15654 476 aaKnown RBP12.34□□□□□ -0.43
LIG1-217ENST00000599165 MYLK3Q32MK0 819 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 INO80DQ53TQ3 878 aaPredicted RBP12.34□□□□□ -0.43
LIG1-217ENST00000599165 NEK5Q6P3R8 708 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 GCNT7Q6ZNI0 430 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 RFX8Q6ZV50 586 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 RAB44Q7Z6P3 723 aaPredicted RBP12.34□□□□□ -0.43
LIG1-217ENST00000599165 PRPF39Q86UA1 669 aaKnown RBP12.34□□□□□ -0.43
LIG1-217ENST00000599165 GATAD2AQ86YP4 633 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 MFSD2AQ8NA29 543 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 SAP25Q8TEE9 199 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 ELF4Q99607 663 aaPredicted RBP12.34□□□□□ -0.43
LIG1-217ENST00000599165 MYOCQ99972 504 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 SCNM1Q9BWG6 230 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 CATSPERBQ9H7T0 1116 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 FZD3Q9NPG1 666 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 ETNK2Q9NVF9 386 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 DMTF1Q9Y222 760 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 ITM2BQ9Y287 266 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 LUC7L2Q9Y383 392 aaKnown RBP12.34□□□□□ -0.43
LIG1-217ENST00000599165 FARP1Q9Y4F1 1045 aaPredicted RBP12.34□□□□□ -0.43
LIG1-217ENST00000599165 BZW2Q9Y6E2 419 aaKnown RBP12.34□□□□□ -0.43
LIG1-217ENST00000599165 SCINQ9Y6U3 715 aa12.34□□□□□ -0.43
LIG1-217ENST00000599165 GOLGA4Q13439 2230 aaKnown RBP12.34□□□□□ -0.43
LIG1-217ENST00000599165 ZSCAN5CA6NGD5 496 aaPredicted RBP12.33□□□□□ -0.44
LIG1-217ENST00000599165 C16orf96A6NNT2 1141 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 EIF3CLB5ME19 914 aaKnown RBP12.33□□□□□ -0.44
LIG1-217ENST00000599165 AREL1O15033 823 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 SLC31A1O15431 190 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 FLRT2O43155 660 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 AP1G1O43747 822 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 PRAMEF11O60813 436 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 UGT2B4P06133 528 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 FTH1P19P0C7X4 201 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 ITIH2P19823 946 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 RECQLP46063 649 aaPredicted RBP12.33□□□□□ -0.44
LIG1-217ENST00000599165 PAPOLAP51003 745 aaKnown RBP12.33□□□□□ -0.44
LIG1-217ENST00000599165 NDST2P52849 883 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 C21orf59P57076 290 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 GEMIN4P57678 1058 aaKnown RBP12.33□□□□□ -0.44
LIG1-217ENST00000599165 DPYSL2Q16555 572 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 SMTNL2Q2TAL5 461 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 ZNF805Q5CZA5 627 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 LRRC73Q5JTD7 316 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 ALKBH5Q6P6C2 394 aaKnown RBP12.33□□□□□ -0.44
LIG1-217ENST00000599165 ADAT2Q7Z6V5 191 aaKnown RBP12.33□□□□□ -0.44
LIG1-217ENST00000599165 IQCHQ86VS3 1027 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 PSTKQ8IV42 348 aaKnown RBP12.33□□□□□ -0.44
LIG1-217ENST00000599165 VSTM4Q8IW00 320 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 SLC22A18ASQ8N1D0 253 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 NIPA2Q8N8Q9 360 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 PNPLA1Q8N8W4 532 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 TSC1Q92574 1164 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 GATA6Q92908 595 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 IQCDQ96DY2 449 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 TRIM11Q96F44 468 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 EXOC2Q96KP1 924 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 KLF6Q99612 283 aaPredicted RBP12.33□□□□□ -0.44
LIG1-217ENST00000599165 EIF3CQ99613 913 aaKnown RBP12.33□□□□□ -0.44
LIG1-217ENST00000599165 DNAJC7Q99615 494 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.33□□□□□ -0.44
LIG1-217ENST00000599165 PACSIN1Q9BY11 444 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms