RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 SPTY2D1-AS1A0A0U1RR47 76 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 K7ESM1 405 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 OPA1O60313 960 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 SDC4P31431 198 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 RABIFP47224 123 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 CDO1Q16878 200 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 C15orf59Q2T9L4 293 aaPredicted RBP24.33■■□□□ 1.49
LSM4-202ENST00000593564 TBC1D25Q3MII6 688 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 ZNF542PQ5EBM4 170 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 RWDD4Q6NW29 188 aaKnown RBP24.33■■□□□ 1.49
LSM4-202ENST00000593564 PARGQ86W56 976 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 ARHGEF2Q92974 986 aaKnown RBP24.33■■□□□ 1.49
LSM4-202ENST00000593564 C1QTNF2Q9BXJ5 285 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 NUP62CLQ9H1M0 184 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 EVA1BQ9NVM1 165 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 TMEM248Q9NWD8 314 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 TAB2Q9NYJ8 693 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 CHMP5Q9NZZ3 219 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 NEU3Q9UQ49 428 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 U3KQA8 63 aa24.33■■□□□ 1.49
LSM4-202ENST00000593564 TDRD6O60522 2096 aaKnown RBP24.32■■□□□ 1.48
LSM4-202ENST00000593564 C2CD4BA6NLJ0 364 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 C16orf96A6NNT2 1141 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 TSPAN6O43657 245 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 GFPT2O94808 682 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 GSRP00390 522 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 CSF2P04141 144 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 NME1P15531 152 aaKnown RBP24.32■■□□□ 1.48
LSM4-202ENST00000593564 PTPN9P43378 593 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 DUSP3P51452 185 aaPredicted RBP24.32■■□□□ 1.48
LSM4-202ENST00000593564 FMO1Q01740 532 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 SGCGQ13326 291 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 ZNF805Q5CZA5 627 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 STRADAQ7RTN6 431 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 ZNF548Q8NEK5 533 aaPredicted RBP24.32■■□□□ 1.48
LSM4-202ENST00000593564 ASB12Q8WXK4 309 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 KLF6Q99612 283 aaPredicted RBP24.32■■□□□ 1.48
LSM4-202ENST00000593564 MAGEH1Q9H213 219 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 PCDHB1Q9Y5F3 818 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 RAI2Q9Y5P3 530 aa24.32■■□□□ 1.48
LSM4-202ENST00000593564 IGLON5A6NGN9 336 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 FAM72CH0Y354 149 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 H3BM21 787 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 FPGTO14772 594 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 NEBLO76041 1014 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 CHRNB2P17787 502 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 GKP32189 559 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 ABL2P42684 1182 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 POLD3Q15054 466 aaPredicted RBP24.31■■□□□ 1.48
LSM4-202ENST00000593564 FAM72AQ5TYM5 149 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 FAM72DQ6L9T8 149 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 FAM72BQ86X60 149 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 RYBPQ8N488 228 aaPredicted RBP24.31■■□□□ 1.48
LSM4-202ENST00000593564 DENND6BQ8NEG7 585 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 OR2AP1Q8NGE2 309 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 OR6K2Q8NGY2 324 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 CENPIQ92674 756 aaPredicted RBP24.31■■□□□ 1.48
LSM4-202ENST00000593564 TBC1D31Q96DN5 1066 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 DEPDC7Q96QD5 511 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 C11orf70Q9BRQ4 267 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 DNAI1Q9UI46 699 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 HPCAL4Q9UM19 191 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 CSNK1G3Q9Y6M4 447 aa24.31■■□□□ 1.48
LSM4-202ENST00000593564 RAMP2O60895 175 aa24.3■■□□□ 1.48
LSM4-202ENST00000593564 LRIG2O94898 1065 aa24.3■■□□□ 1.48
LSM4-202ENST00000593564 MYF5P13349 255 aa24.3■■□□□ 1.48
LSM4-202ENST00000593564 SOX5P35711 763 aa24.3■■□□□ 1.48
LSM4-202ENST00000593564 JAM2P57087 298 aa24.3■■□□□ 1.48
LSM4-202ENST00000593564 SNRPD1P62314 119 aaKnown RBP24.3■■□□□ 1.48
LSM4-202ENST00000593564 TRIM72Q6ZMU5 477 aa24.3■■□□□ 1.48
LSM4-202ENST00000593564 PHLDB2Q86SQ0 1253 aa24.3■■□□□ 1.48
LSM4-202ENST00000593564 JOSD2Q8TAC2 188 aa24.3■■□□□ 1.48
LSM4-202ENST00000593564 GPT2Q8TD30 523 aa24.3■■□□□ 1.48
LSM4-202ENST00000593564 VOPP1Q96AW1 172 aa24.3■■□□□ 1.48
LSM4-202ENST00000593564 OSBPL1AQ9BXW6 950 aa24.3■■□□□ 1.48
LSM4-202ENST00000593564 IPO11Q9UI26 975 aaKnown RBP24.3■■□□□ 1.48
LSM4-202ENST00000593564 DAAM1Q9Y4D1 1078 aa24.3■■□□□ 1.48
LSM4-202ENST00000593564 CHD5Q8TDI0 1954 aa24.3■■□□□ 1.48
LSM4-202ENST00000593564 GCN1Q92616 2671 aaKnown RBP24.29■■□□□ 1.48
LSM4-202ENST00000593564 NEMP1O14524 444 aa24.29■■□□□ 1.48
LSM4-202ENST00000593564 RIOK3O14730 519 aaKnown RBP24.29■■□□□ 1.48
LSM4-202ENST00000593564 SPINT1O43278 529 aa24.29■■□□□ 1.48
LSM4-202ENST00000593564 POP4O95707 220 aaKnown RBP24.29■■□□□ 1.48
LSM4-202ENST00000593564 PLEKP08567 350 aaPredicted RBP24.29■■□□□ 1.48
LSM4-202ENST00000593564 KLK7P49862 253 aa24.29■■□□□ 1.48
LSM4-202ENST00000593564 HDAC4P56524 1084 aa24.29■■□□□ 1.48
LSM4-202ENST00000593564 PFN3P60673 137 aa24.29■■□□□ 1.48
LSM4-202ENST00000593564 POLR2FP61218 127 aaKnown RBP24.29■■□□□ 1.48
LSM4-202ENST00000593564 PDE1CQ14123 709 aaPredicted RBP24.29■■□□□ 1.48
LSM4-202ENST00000593564 ZCCHC8Q6NZY4 707 aaKnown RBP24.29■■□□□ 1.48
LSM4-202ENST00000593564 SLC30A5Q8TAD4 765 aa24.29■■□□□ 1.48
LSM4-202ENST00000593564 ENOX1Q8TC92 643 aaKnown RBP24.29■■□□□ 1.48
LSM4-202ENST00000593564 NTAN1Q96AB6 310 aa24.29■■□□□ 1.48
LSM4-202ENST00000593564 ARHGEF26Q96DR7 871 aa24.29■■□□□ 1.48
LSM4-202ENST00000593564 FCRL3Q96P31 734 aaPredicted RBP24.29■■□□□ 1.48
LSM4-202ENST00000593564 NCKIPSDQ9NZQ3 722 aa24.29■■□□□ 1.48
LSM4-202ENST00000593564 KLF15Q9UIH9 416 aa24.29■■□□□ 1.48
LSM4-202ENST00000593564 GGT7Q9UJ14 662 aa24.29■■□□□ 1.48
LSM4-202ENST00000593564 ITM2BQ9Y287 266 aa24.29■■□□□ 1.48
LSM4-202ENST00000593564 KRIT1O00522 736 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms