RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 AHI1Q8N157 1196 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 OR52K1Q8NGK4 314 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 TTC17Q96AE7 1141 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 MRGPRX3Q96LB0 322 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 MRGPRX2Q96LB1 330 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 CIPCQ9C0C6 399 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 POLR1EQ9GZS1 481 aaKnown RBP25.46■■□□□ 1.67
SHMT1-207ENST00000580002 MTG2Q9H4K7 406 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 ZDHHC4Q9NPG8 344 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 MTRF1LQ9UGC7 380 aaKnown RBP25.46■■□□□ 1.67
SHMT1-207ENST00000580002 ERLIN1O75477 346 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 GKP32189 559 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 NR1H3Q13133 447 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 GRAMD4Q6IC98 578 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 EMBQ6PCB8 327 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 MPP5Q8N3R9 675 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 CAVIN3Q969G5 261 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 SEMA4AQ9H3S1 761 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 SAYSD1Q9NPB0 183 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 ERVW-1Q9UQF0 538 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 SLC27A6Q9Y2P4 619 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 MYO10Q9HD67 2058 aa25.45■■□□□ 1.67
SHMT1-207ENST00000580002 NARSO43776 548 aaKnown RBP25.45■■□□□ 1.66
SHMT1-207ENST00000580002 POLR2EP19388 210 aaKnown RBP25.45■■□□□ 1.66
SHMT1-207ENST00000580002 CHRNA4P43681 627 aa25.45■■□□□ 1.66
SHMT1-207ENST00000580002 RHOAP61586 193 aa25.45■■□□□ 1.66
SHMT1-207ENST00000580002 UAP1Q16222 522 aaPredicted RBP25.45■■□□□ 1.66
SHMT1-207ENST00000580002 PTPRNQ16849 979 aa25.45■■□□□ 1.66
SHMT1-207ENST00000580002 BBS9Q3SYG4 887 aa25.45■■□□□ 1.66
SHMT1-207ENST00000580002 ANKMY2Q8IV38 441 aa25.45■■□□□ 1.66
SHMT1-207ENST00000580002 TADA1Q96BN2 335 aa25.45■■□□□ 1.66
SHMT1-207ENST00000580002 MYO19Q96H55 970 aa25.45■■□□□ 1.66
SHMT1-207ENST00000580002 TRIM56Q9BRZ2 755 aaKnown RBP25.45■■□□□ 1.66
SHMT1-207ENST00000580002 ARFGAP3Q9NP61 516 aa25.45■■□□□ 1.66
SHMT1-207ENST00000580002 ARGLU1Q9NWB6 273 aaPredicted RBP25.45■■□□□ 1.66
SHMT1-207ENST00000580002 WNT3AP56704 352 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 CRADDP78560 199 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 PDIA2Q13087 525 aaKnown RBP25.44■■□□□ 1.66
SHMT1-207ENST00000580002 PRPSAP1Q14558 356 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 HIF1AQ16665 826 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 SH2D3CQ8N5H7 860 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 ZNF366Q8N895 744 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 MCUQ8NE86 351 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 C9orf72Q96LT7 481 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 FICDQ9BVA6 458 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 EIF2B3Q9NR50 452 aaKnown RBP25.44■■□□□ 1.66
SHMT1-207ENST00000580002 HCN2Q9UL51 889 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 MIA3Q5JRA6 1907 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 PPFIA2O75334 1257 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 SUN1O94901 812 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 TPH1P17752 444 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 ADRA1AP35348 466 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 DLG2Q15700 870 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 ALG1LQ6GMV1 187 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 TXNDC11Q6PKC3 985 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 VOPP1Q96AW1 172 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 FAM129AQ9BZQ8 928 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 EPB41L4BQ9H329 900 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 ELOVL2Q9NXB9 296 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 HS3ST2Q9Y278 367 aa25.44■■□□□ 1.66
SHMT1-207ENST00000580002 TTC34A8MYJ7 566 aa25.43■■□□□ 1.66
SHMT1-207ENST00000580002 BNIP3LO60238 219 aa25.43■■□□□ 1.66
SHMT1-207ENST00000580002 SESN2P58004 480 aaPredicted RBP25.43■■□□□ 1.66
SHMT1-207ENST00000580002 DMC1Q14565 340 aa25.43■■□□□ 1.66
SHMT1-207ENST00000580002 MAP9Q49MG5 647 aa25.43■■□□□ 1.66
SHMT1-207ENST00000580002 ACCSLQ4AC99 568 aa25.43■■□□□ 1.66
SHMT1-207ENST00000580002 DENND2CQ68D51 928 aa25.43■■□□□ 1.66
SHMT1-207ENST00000580002 DENND5AQ6IQ26 1287 aa25.43■■□□□ 1.66
SHMT1-207ENST00000580002 ZNF557Q8N988 423 aaPredicted RBP25.43■■□□□ 1.66
SHMT1-207ENST00000580002 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP25.43■■□□□ 1.66
SHMT1-207ENST00000580002 EVLQ9UI08 416 aaPredicted RBP25.43■■□□□ 1.66
SHMT1-207ENST00000580002 PCDHGC4Q9Y5F7 938 aa25.43■■□□□ 1.66
SHMT1-207ENST00000580002 ANXA9O76027 345 aa25.42■■□□□ 1.66
SHMT1-207ENST00000580002 GALK1P51570 392 aa25.42■■□□□ 1.66
SHMT1-207ENST00000580002 GEMP55040 296 aa25.42■■□□□ 1.66
SHMT1-207ENST00000580002 ARL4CP56559 192 aa25.42■■□□□ 1.66
SHMT1-207ENST00000580002 EMC10Q5UCC4 262 aa25.42■■□□□ 1.66
SHMT1-207ENST00000580002 BBS5Q8N3I7 341 aa25.42■■□□□ 1.66
SHMT1-207ENST00000580002 MAFAQ8NHW3 353 aaPredicted RBP25.42■■□□□ 1.66
SHMT1-207ENST00000580002 UHMK1Q8TAS1 419 aaKnown RBP25.42■■□□□ 1.66
SHMT1-207ENST00000580002 SCUBE2Q9NQ36 999 aa25.42■■□□□ 1.66
SHMT1-207ENST00000580002 SLC25A13Q9UJS0 675 aa25.42■■□□□ 1.66
SHMT1-207ENST00000580002 AAR2Q9Y312 384 aaKnown RBP25.42■■□□□ 1.66
SHMT1-207ENST00000580002 TICRRQ7Z2Z1 1910 aa25.42■■□□□ 1.66
SHMT1-207ENST00000580002 HSPA9P38646 679 aaKnown RBP25.41■■□□□ 1.66
SHMT1-207ENST00000580002 MAGEA3P43357 314 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 SLC20A2Q08357 652 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 KYNUQ16719 465 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 LRRC8BQ6P9F7 803 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 ZBED8Q8IZ13 594 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 SLC25A41Q8N5S1 370 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 TERB1Q8NA31 727 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 SMIM14Q96QK8 99 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 NUDCD1Q96RS6 583 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 TBL1YQ9BQ87 522 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 CDC42EP4Q9H3Q1 356 aaKnown RBP25.41■■□□□ 1.66
SHMT1-207ENST00000580002 HEBP1Q9NRV9 189 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 TBC1D3BA6NDS4 549 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 E7ESA3 106 aa25.41■■□□□ 1.66
SHMT1-207ENST00000580002 SASH3O75995 380 aa25.41■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms