RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 PRRT2Q7Z6L0 340 aaPredicted RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 TMEM102Q8N9M5 508 aaPredicted RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 KDM1BQ8NB78 822 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 RNF34Q969K3 372 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 NXNL1Q96CM4 212 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 CXCL16Q9H2A7 254 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 POMKQ9H5K3 350 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 RRN3Q9NYV6 651 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 RSL24D1Q9UHA3 163 aaKnown RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 SNX13Q9Y5W8 968 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 PSMD12O00232 456 aaPredicted RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 SDHDO14521 159 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 CXCL11O14625 94 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 HSPA1AP0DMV8 641 aaKnown RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 HSPA1BP0DMV9 641 aaKnown RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 PTPN1P18031 435 aaKnown RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 AKAP5P24588 427 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 CD151P48509 253 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 ESRRGP62508 458 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 TMEM62Q0P6H9 643 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 TRAP1Q12931 704 aaKnown RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 PSMD5Q16401 504 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 AGKQ53H12 422 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 TRIM67Q6ZTA4 783 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 LSMEM2Q8N112 164 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 TOP6BLQ8N6T0 577 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 SGF29Q96ES7 293 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 TBL1YQ9BQ87 522 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 TMEM79Q9BSE2 394 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 ULBP1Q9BZM6 244 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 RBM38Q9H0Z9 239 aaKnown RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 SEMA6AQ9H2E6 1030 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 NXF3Q9H4D5 531 aaKnown RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 CAAP1Q9H8G2 361 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 TRPC7Q9HCX4 862 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 TXNRD2Q9NNW7 524 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 VTA1Q9NP79 307 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 PNPLA3Q9NST1 481 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 RNF19AQ9NV58 838 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 RBPJLQ9UBG7 517 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 FBXW11Q9UKB1 542 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 SQORQ9Y6N5 450 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 FAM72CH0Y354 149 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 CLDN5O00501 218 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 NCAM1P13591 858 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 YBX3P16989 372 aaKnown RBP eCLIP10.88□□□□□ -0.67
CCDC40-207ENST00000572253 WARSP23381 471 aaKnown RBP10.88□□□□□ -0.67
CCDC40-207ENST00000572253 NDUFV1P49821 464 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 FAM83EQ2M2I3 478 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 SAMD4BQ5PRF9 694 aaKnown RBP10.88□□□□□ -0.67
CCDC40-207ENST00000572253 FAM72AQ5TYM5 149 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 FAM72DQ6L9T8 149 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 FAM72BQ86X60 149 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 SULF1Q8IWU6 871 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 FAM156AQ8NDB6 213 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 TRPC4APQ8TEL6 797 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 USP33Q8TEY7 942 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 RMND5BQ96G75 393 aaPredicted RBP10.88□□□□□ -0.67
CCDC40-207ENST00000572253 PPP1R2P1Q96PQ5 205 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 TSPAN18Q96SJ8 248 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 SLC25A23Q9BV35 468 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 PREBQ9HCU5 417 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 SPAG4Q9NPE6 437 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 KLK14Q9P0G3 267 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 SMIM28A0A1B0GU29 152 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 AHSGP02765 367 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 ZNF23P17027 643 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 HOXA11P31270 313 aaPredicted RBP10.88□□□□□ -0.67
CCDC40-207ENST00000572253 DPP6P42658 865 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 MAP3K7CLP57077 242 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 RHDQ02161 417 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 PCBP1Q15365 356 aaKnown RBP eCLIP10.88□□□□□ -0.67
CCDC40-207ENST00000572253 ZNF618Q5T7W0 954 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 OMDQ99983 421 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 TRIM15Q9C019 465 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 COQ10BQ9H8M1 238 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 GPRC5DQ9NZD1 345 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 NRCAMQ92823 1304 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 RRN3P2A6NIE6 340 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 SPTLC1O15269 473 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 H6PDO95479 791 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 PYGLP06737 847 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 C8BP07358 591 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 SBK3P0C264 359 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 CD1EP15812 388 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 DNAJB13P59910 316 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 ITGA7Q13683 1181 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 GK3PQ14409 553 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 POU6F1Q14863 301 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 Q3C1V9 767 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 HFE2Q6ZVN8 426 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 ERO1BQ86YB8 467 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 CENPLQ8N0S6 344 aaPredicted RBP10.88□□□□□ -0.67
CCDC40-207ENST00000572253 IPMKQ8NFU5 416 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 IRGQQ8WZA9 623 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 LPGAT1Q92604 370 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 FAM210AQ96ND0 272 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 SENP6Q9GZR1 1112 aaPredicted RBP10.88□□□□□ -0.67
CCDC40-207ENST00000572253 WDCPQ9H6R7 721 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms