RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 SLC35G2Q8TBE7 412 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 CTNNBL1Q8WYA6 563 aaPredicted RBP14.18□□□□□ -0.14
CLN3-235ENST00000568497 NTAN1Q96AB6 310 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 TRIM11Q96F44 468 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 WBP1Q96G27 269 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 C1orf74Q96LT6 269 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 NRSN2Q9GZP1 204 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 ITM2CQ9NQX7 267 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 ETNK2Q9NVF9 386 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 VPS51Q9UID3 782 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 PLA2G4CQ9UP65 541 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 PCDHGA1Q9Y5H4 931 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 SCINQ9Y6U3 715 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 ENC1O14682 589 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 PRPSAP2O60256 369 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 PCDHGA12O60330 932 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 SYNCRIPO60506 623 aaKnown RBP14.17□□□□□ -0.14
CLN3-235ENST00000568497 RFPL3O75679 317 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 MAP3K6O95382 1288 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 RARAP10276 462 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 ACADMP11310 421 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 AMPD1P23109 780 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 OXTRP30559 389 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 GKP32189 559 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 MAGEA1P43355 309 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 TMPRSS3P57727 454 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 TPI1P60174 286 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 SLC25A11Q02978 314 aaKnown RBP14.17□□□□□ -0.14
CLN3-235ENST00000568497 DNAJC3Q13217 504 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 RTP5Q14D33 572 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 BROXQ5VW32 411 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 LAYNQ6UX15 382 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 Q6ZVU0 165 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 ADAT2Q7Z6V5 191 aaKnown RBP14.17□□□□□ -0.14
CLN3-235ENST00000568497 ZNF354CQ86Y25 554 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 TMPRSS6Q8IU80 811 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 CHST14Q8NCH0 376 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 OR6K2Q8NGY2 324 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 HMCESQ96FZ2 354 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 TRIM10Q9UDY6 481 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 SERGEFQ9UGK8 458 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 SALL4Q9UJQ4 1053 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 ANKRD6Q9Y2G4 727 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 TBC1D30Q9Y2I9 924 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 FCF1Q9Y324 198 aaKnown RBP14.17□□□□□ -0.14
CLN3-235ENST00000568497 PAXBP1Q9Y5B6 917 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 DUSP10Q9Y6W6 482 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 MYLKQ15746 1914 aa14.17□□□□□ -0.14
CLN3-235ENST00000568497 PIEZO2Q9H5I5 2752 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 H0Y8X5 98 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 EEF2KO00418 725 aaKnown RBP14.16□□□□□ -0.14
CLN3-235ENST00000568497 RNF8O76064 485 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 ATP5BP06576 529 aaKnown RBP14.16□□□□□ -0.14
CLN3-235ENST00000568497 TMEM253P0C7T8 217 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 CDK4P11802 303 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 KRT10P13645 584 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 RHOQP17081 205 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 L1CAMP32004 1257 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 PSMD8P48556 350 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 CSRP3P50461 194 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 RPS14P62263 151 aaKnown RBP14.16□□□□□ -0.14
CLN3-235ENST00000568497 ARF5P84085 180 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 GNA12Q03113 381 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 ENPP2Q13822 863 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 EIF4HQ15056 248 aaKnown RBP14.16□□□□□ -0.14
CLN3-235ENST00000568497 ERMARDQ5T6L9 678 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 C9orf64Q5T6V5 341 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 TTC39BQ5VTQ0 682 aaPredicted RBP14.16□□□□□ -0.14
CLN3-235ENST00000568497 TMEM139Q8IV31 216 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 MMAAQ8IVH4 418 aaKnown RBP14.16□□□□□ -0.14
CLN3-235ENST00000568497 NPWQ8N729 165 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 PRCCQ92733 491 aaPredicted RBP14.16□□□□□ -0.14
CLN3-235ENST00000568497 SIPA1Q96FS4 1042 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 TRIM4Q9C037 500 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 PCED1AQ9H1Q7 454 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 CPNE5Q9HCH3 593 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 ATP13A1Q9HD20 1204 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 MRPL47Q9HD33 250 aaKnown RBP14.16□□□□□ -0.14
CLN3-235ENST00000568497 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.16□□□□□ -0.14
CLN3-235ENST00000568497 CWC15Q9P013 229 aaKnown RBP14.16□□□□□ -0.14
CLN3-235ENST00000568497 PCDHA13Q9Y5I0 950 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 SLCO1B1Q9Y6L6 691 aa14.16□□□□□ -0.14
CLN3-235ENST00000568497 MYO1FO00160 1098 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 MID1O15344 667 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 TIMM44O43615 452 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 BUB1O43683 1085 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 ZMPSTE24O75844 475 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 PROSCO94903 275 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 MOCS3O95396 460 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 LDOC1O95751 146 aaPredicted RBP14.15□□□□□ -0.14
CLN3-235ENST00000568497 CD160O95971 181 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 IGLV3-19P01714 112 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 NTRK1P04629 796 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 SRCP12931 536 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 DNA2P51530 1060 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 ST8SIA6P61647 398 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 DLG2Q15700 870 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 TBC1D25Q3MII6 688 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 PPP1R2P3Q6NXS1 205 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 B4GALNT4Q76KP1 1039 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms