RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.08■□□□□ 0.97
CLN3-219ENST00000565778 KLC2Q9H0B6 622 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 DHX35Q9H5Z1 703 aaKnown RBP21.08■□□□□ 0.97
CLN3-219ENST00000565778 DONSONQ9NYP3 566 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 AP4E1Q9UPM8 1137 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 ZFR2Q9UPR6 939 aaKnown RBP21.08■□□□□ 0.97
CLN3-219ENST00000565778 FAM221BA6H8Z2 402 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 FGF10O15520 208 aaPredicted RBP21.07■□□□□ 0.96
CLN3-219ENST00000565778 DAPK3O43293 454 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 GSRP00390 522 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 PTMSP20962 102 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 HNRNPA2B1P22626 353 aaKnown RBP21.07■□□□□ 0.96
CLN3-219ENST00000565778 RXRGP48443 463 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 RAD51Q06609 339 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 SERINC3Q13530 473 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 PARP15Q460N3 678 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 ZNF805Q5CZA5 627 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 SEL1L3Q68CR1 1132 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 UMODL1-AS1Q8N2C9 162 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 SAP25Q8TEE9 199 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 ZNF653Q96CK0 615 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 FZD3Q9NPG1 666 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 FTSJ1Q9UET6 329 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 FADS3Q9Y5Q0 445 aa21.07■□□□□ 0.96
CLN3-219ENST00000565778 CHD8Q9HCK8 2581 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 C16orf96A6NNT2 1141 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 NEMP1O14524 444 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 KRT37O76014 449 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 TMCC1O94876 653 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 LDOC1O95751 146 aaPredicted RBP21.06■□□□□ 0.96
CLN3-219ENST00000565778 PAK4O96013 591 aaPredicted RBP21.06■□□□□ 0.96
CLN3-219ENST00000565778 THEGLP0DJG4 465 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 HTR7P34969 479 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 RPS21P63220 83 aaKnown RBP21.06■□□□□ 0.96
CLN3-219ENST00000565778 INO80DQ53TQ3 878 aaPredicted RBP21.06■□□□□ 0.96
CLN3-219ENST00000565778 TDRD12Q587J7 1177 aaKnown RBP21.06■□□□□ 0.96
CLN3-219ENST00000565778 ATXN7L2Q5T6C5 722 aaPredicted RBP21.06■□□□□ 0.96
CLN3-219ENST00000565778 PARS2Q7L3T8 475 aaKnown RBP21.06■□□□□ 0.96
CLN3-219ENST00000565778 EID2Q8N6I1 236 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 ARFGAP1Q8N6T3 406 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 NETO2Q8NC67 525 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 CASKIN2Q8WXE0 1202 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 TRIM11Q96F44 468 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 KLHL32Q96NJ5 620 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 TMEM121BQ9BXQ6 578 aaPredicted RBP21.06■□□□□ 0.96
CLN3-219ENST00000565778 SLC17A9Q9BYT1 436 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 TRIM7Q9C029 511 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 ISCUQ9H1K1 167 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 MRPL47Q9HD33 250 aaKnown RBP21.06■□□□□ 0.96
CLN3-219ENST00000565778 TOR4AQ9NXH8 423 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 BZW2Q9Y6E2 419 aaKnown RBP21.06■□□□□ 0.96
CLN3-219ENST00000565778 SCINQ9Y6U3 715 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 TMEM131Q92545 1883 aa21.06■□□□□ 0.96
CLN3-219ENST00000565778 EEF2KO00418 725 aaKnown RBP21.05■□□□□ 0.96
CLN3-219ENST00000565778 PRPSAP2O60256 369 aa21.05■□□□□ 0.96
CLN3-219ENST00000565778 UGT2B4P06133 528 aa21.05■□□□□ 0.96
CLN3-219ENST00000565778 MYBL1P10243 752 aa21.05■□□□□ 0.96
CLN3-219ENST00000565778 CLDN2P57739 230 aa21.05■□□□□ 0.96
CLN3-219ENST00000565778 RHOAP61586 193 aa21.05■□□□□ 0.96
CLN3-219ENST00000565778 SGCGQ13326 291 aa21.05■□□□□ 0.96
CLN3-219ENST00000565778 CA9Q16790 459 aa21.05■□□□□ 0.96
CLN3-219ENST00000565778 KIAA1161Q6NSJ0 714 aa21.05■□□□□ 0.96
CLN3-219ENST00000565778 GDPD4Q6W3E5 623 aa21.05■□□□□ 0.96
CLN3-219ENST00000565778 TTC7BQ86TV6 843 aa21.05■□□□□ 0.96
CLN3-219ENST00000565778 TMEM145Q8NBT3 493 aa21.05■□□□□ 0.96
CLN3-219ENST00000565778 RAB7BQ96AH8 199 aa21.05■□□□□ 0.96
CLN3-219ENST00000565778 GDAP1L1Q96MZ0 367 aa21.05■□□□□ 0.96
CLN3-219ENST00000565778 SNRNP25Q9BV90 132 aaKnown RBP21.05■□□□□ 0.96
CLN3-219ENST00000565778 OSBPL1AQ9BXW6 950 aa21.05■□□□□ 0.96
CLN3-219ENST00000565778 A0A1W2PQJ5 194 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 TMEM8BA6NDV4 472 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 EIF3CLB5ME19 914 aaKnown RBP21.04■□□□□ 0.96
CLN3-219ENST00000565778 AP1G1O43747 822 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 IGSF6O95976 241 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 EPHA8P29322 1005 aaPredicted RBP21.04■□□□□ 0.96
CLN3-219ENST00000565778 MIPP30301 263 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 NDST2P52849 883 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 NFKBIBQ15653 356 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 TMEM259Q4ZIN3 620 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 VPS36Q86VN1 386 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 KDF1Q8NAX2 398 aaPredicted RBP21.04■□□□□ 0.96
CLN3-219ENST00000565778 FNIP1Q8TF40 1166 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 SYN2Q92777 582 aaPredicted RBP21.04■□□□□ 0.96
CLN3-219ENST00000565778 CELF6Q96J87 481 aaKnown RBP21.04■□□□□ 0.96
CLN3-219ENST00000565778 CNDP2Q96KP4 475 aaKnown RBP21.04■□□□□ 0.96
CLN3-219ENST00000565778 PEBP4Q96S96 227 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 EIF3CQ99613 913 aaKnown RBP21.04■□□□□ 0.96
CLN3-219ENST00000565778 NCAPGQ9BPX3 1015 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 CALN1Q9BXU9 219 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 ZMIZ1Q9ULJ6 1067 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 HS3ST3A1Q9Y663 406 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 CABIN1Q9Y6J0 2220 aa21.04■□□□□ 0.96
CLN3-219ENST00000565778 IGLON5A6NGN9 336 aa21.03■□□□□ 0.96
CLN3-219ENST00000565778 ENC1O14682 589 aa21.03■□□□□ 0.96
CLN3-219ENST00000565778 TSPAN6O43657 245 aa21.03■□□□□ 0.96
CLN3-219ENST00000565778 PBX1P40424 430 aa21.03■□□□□ 0.96
CLN3-219ENST00000565778 ZBED6P86452 979 aa21.03■□□□□ 0.96
CLN3-219ENST00000565778 CYTH1Q15438 398 aa21.03■□□□□ 0.96
CLN3-219ENST00000565778 PPP6R3Q5H9R7 873 aaPredicted RBP21.03■□□□□ 0.96
CLN3-219ENST00000565778 Q6ZSR6 202 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms